Sequence
atgc intronic sequence ATGC exonic sequencegttaggcatatatatgatttcatttagcaaatttctgatggtatattgtgtttatactttccagttcaatctgtctaaaaagtcatatggattttgatcttttgggaatgttttctgctatacagAGAATTTGCTGGTAACAGATGATGTTTTGAAAATTGCTGATTTTGGACTGGCTAGAGAAGTATCATCGATGCCTCCATATACTCAGTATGTTTCCACACG
Basic information
species | Glycine max |
transcript | GLYMA16G10820.2 |
intron # | 7 |
splice site | 3' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA16G10820.2 (Glycine max), 3'ss of exon 7
lower sequence: AT4G13020.1 (Arabidopsis thaliana), 3'ss of exon 6
gttaggcatatatatgatttcatttagcaaatttctgatggtatattgtgtttatactttccagttcaatctgtctaaaaagtcatatggattttgatcttttgggaatgttttctgctatac------agAGAATTTGCTGGTAACAGATGATGTTTTGAAAATTGCTGATTTTGGACTGGCTAGAGAAGTATCATCGATGCCTCCATATACTCAGTATGTTTCCACACG
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----------------------------------------gtatgttttg---gtactttgta-ttgtattaattgaaatggttttcgctctttgaatgtcttataaacaagttttgttctgtttctgaagAGAATTTGCTGGTGACCAACAATATCCTGAAAATTGCTGACTTTGGGTTGGCTAGAGAAGTTGCATCTATGCCTCCTTACACTGAATATGTGTCCACACG
upper sequence: GLYMA16G10820.2 (Glycine max), 3'ss of exon 7
lower sequence: Vv07s0151g00350.t01 (Vitis vinifera), 3'ss of exon 6
------gttaggcatatatatgattt--catttagcaaatttctgatggtatattgtgtttatactttccagttcaatctgtctaaaaagtcatatggattttgatcttttgggaatgttttctgctatacagAGAATTTGCTGGTAACAGATGATGTTTTGAAAATTGCTGATTTTGGACTGGCTAGAGAAGTATCATCGATGCCTCCATATACTCAGTATGTTTCCACACG
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gtatgaagttgacttctacaaaattatgcacttgtgcagtctatgatttggaattttatttgcatcttcatgaagaat-tgtgtaggctttatctaatagtgtatattatcaaacaccatttctgtcttcaagAGAATTTGCTGGTGACAAACAATGTGATTAAAATTGCTGACTTCGGACTGGCTAGAGAAGTATCATCTATGCCTCCTTATACTGACTATGTGTCCACACG atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.ctgtctaaaaagtcatatggattttgatcttttgggaatgttttctgctatacagAGAATTTGCTGGTAACAGATGATGTTTTGAAAATTGCTGATTTTGGACTGGCTAGAGAAGTATCATCGATGCCTCCATATACTCAGTATGTTTCCACACG
ttttctgct CT-rich tract
taaaaagt TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gttaggcatatatatgatttcatttagcaaatttctgatggtatattgtgtttatactttccagttcaatctgtctaaaaagtcatatggattttgatcttttgggaatgttttctgctatacagAGAATTTGCTGGTAACAGATGATGTTTTGAAAATTGCTGATTTTGGACTGGCTAGAGAAGTATCATCGATGCCTCCATATACTCAGTATGTTTCCACACG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGT