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...attaacaatcttttgttgccttatctaattcaactactgcattgccagagttgatatggcacaattttaaactagagtttggctgttaattctatgacagATAGTTTTCAGAGAGGATTTTGGAACTGATGGCCGTGGTGGATATTTTGACCAGTATGG
species | Glycine max |
transcript | GLYMA16G06850.2 |
intron # | 7 |
splice site | 3' |
intron type | U2 |
EST: TGACAACGTACAG ATAGTTTTCAGAGAGGATTTTGGAACTGATGGCCGTGGTGGATATTTTGACEST: gi|16278453|gb|BI942912.1|BI942912
genomic: TGACAACGTACAGgtgaggattt ... tctatgacagATAGTTTTCAGAGAGGATTTTGGAACTGATGGCCGTGGTGGATATTTTGAC
EST: ATCGGTTTTTCTTGCCACTTTGGAACCGCGACAACATTGACAACGTACAG ATAGTTTTCAGAGAGGATTTTGGAACTGATGGCCGTGGTGGATATTTTGACEST: gi|192310375|gb|FK002255.1|FK002255
genomic: ATCGGTTTTTCTTGCCACTTTGGAACCGCGACAACATTGACAACGTACAGgtgaggattt ... tctatgacagATAGTTTTCAGAGAGGATTTTGGAACTGATGGCCGTGGTGGATATTTTGAC
EST: ATCGGTTTTTCTTACCACTTTGGAACCGCGACAACATTGACAACGTACAG ATAGTTTTCAGAGAGGATTTTGGAACTGATGGCCGTGGTGGATATTTTGACEST: gi|254331186|gb|GR843305.1|GR843305
genomic: ATCGGTTTTTCTTGCCACTTTGGAACCGCGACAACATTGACAACGTACAGgtgaggattt ... tctatgacagATAGTTTTCAGAGAGGATTTTGGAACTGATGGCCGTGGTGGATATTTTGAC
EST: ATCGGTTTTTCTTGCCACTTTGGAACCGCGACAACATTGACAACGTACAG ATAGTTTTCAGAGAGGATTTTGGAACTGATGGCCGTGGTGGATATTTTGACEST: gi|37995859|gb|CF807448.1|CF807448
genomic: ATCGGTTTTTCTTGCCACTTTGGAACCGCGACAACATTGACAACGTACAGgtgaggattt ... tctatgacagATAGTTTTCAGAGAGGATTTTGGAACTGATGGCCGTGGTGGATATTTTGAC
EST: ATCGGTTTTTCTTGCCACTTTGGAACCGCGACAACATTGACAACGTACAG ATAGTTTTCAGAGAGGATTTTGGAACTGATGGCCGTGGTGGATATTTTGACEST: gi|16348742|gb|BI974337.1|BI974337
genomic: ATCGGTTTTTCTTGCCACTTTGGAACCGCGACAACATTGACAACGTACAGgtgaggattt ... tctatgacagATAGTTTTCAGAGAGGATTTTGGAACTGATGGCCGTGGTGGATATTTTGAC
EST: ATCGGTTTTTCTTGCCACTTTGGAACCGCGACAACATTGACAACGTACAG ATAGTTTTCAGAGAGGATTTTGGAACTGATGGCCGTGGTGGATATTTTGACEST: gi|17519559|gb|BM188601.1|BM188601
genomic: ATCGGTTTTTCTTGCCACTTTGGAACCGCGACAACATTGACAACGTACAGgtgaggattt ... tctatgacagATAGTTTTCAGAGAGGATTTTGGAACTGATGGCCGTGGTGGATATTTTGAC
EST: ATCGGTTTTTCTTGCCACTTTGGAACCGCGACAACATTGACAACGTACAG ATAGTTTTCAGAGAGGATTTTGGAACTGATGGCCGTGGTGGATATTTTGAC
genomic: ATCGGTTTTTCTTGCCACTTTGGAACCGCGACAACATTGACAACGTACAGgtgaggattt ... tctatgacagATAGTTTTCAGAGAGGATTTTGGAACTGATGGCCGTGGTGGATATTTTGAC
cagagttgatatggcacaattttaaactagagtttggctgttaattctatgacagATAGTTTTCAGAGAGGATTTTGGAACTGATGGCCGTGGTGGATATTTTGACCAGTATGG
tgttaat putative branch site (score: 3)
acaattttaaacta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| attaacaatcttttgttgccttatctaattcaactactgcattgccagagttgatatggcacaattttaaactagagtttggctgttaattctatgacagATAGTTTTCAGAGAGGATTTTGGAACTGATGGCCGTGGTGGATATTTTGACCAGTATGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGTGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGTGGA