Sequence
atgc intronic sequence ATGC exonic sequence...attttaccaagaatttcttgtttgtaattttccatatatatgtgtgtgtgtatgtgtataaaaatataaaattaaatcaattaaactatttctttttcagCTGGAAACATGCGTCATCTGATAGTTGAGGCTTGTATTGCCCGCAATCTACTGGACACATCTGCATACTTATGGCCAGGTTATGTAAATGGATGTATCAA
Basic information
species | Glycine max |
transcript | GLYMA15G10970.1 |
intron # | 7 |
splice site | 3' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA15G10970.1 (Glycine max), 3'ss of exon 7
lower sequence: AT3G23590.1 (Arabidopsis thaliana), 3'ss of exon 6
-----------------------------------attttaccaagaatttcttgtttgtaattttccatatatatgtgtgtgtgtatgtgtataaaaat---ataaaattaaatcaa--ttaaactatttctttttca-------gCTGGAAACATGCGTCATCTGATAGTTGAGGCTTGTATTGCCCGCAATCTACTGGACACATCTGCATACTTATGGCCAGGTTATGTAAATGGATGTATCAA
|| ||||| || | || ||| | ||| ||| | || ||| | | | || || | || ||| || || | | || |||||||||||||| || |||||||| |||||||||||||| | || ||||||| | || || || | ||||| || ||||| ||||| | |||||
gtaagtttaataaaatttcgctctattgaattgaagttaaaccaatttgtttgtcttcgtattcttcattattgtcgcttgattgtcttcatttgttgattttatgggcctctttcgtgcctaacatactttatgtacatgccgtagCTGGAAACATGCGCCACCTGATAGTCGAGGCTTGTATTGCAAGAAACATACTGGATATGTCGGCTTATTCGTGGCCTGGCTATGTTAATGGCCGAATCAA
upper sequence: GLYMA15G10970.1 (Glycine max), 3'ss of exon 7
lower sequence: Vv05s0020g02570.t01 (Vitis vinifera), 3'ss of exon 6
-attttaccaagaatttcttgtttgtaattttccatatatatgtgtgtgtgta-tgtgtataaaaatataaaattaaatcaattaaactatttctttttcagCTGGAAACATGCGTCATCTGATAGTTGAGGCTTGTATTGCCCGCAATCTACTGGACACATCTGCATACTTATGGCCAGGTTATGTAAATGGATGTATCAA
| |||| | || | ||||| | |||| || | | | ||| ||| | | ||| | | || | || || | ||| |||||||||||||||| ||||| ||||||||||||||||||||| | ||||| |||||||||| ||||| || |||||||| ||||| |||||| | |||||
aaggttacgctgcatgt--tgtttttgcttttggatcagtgtttctgtttgtggtattattaagtttcttaatcctagtccatcttgtatccttgtttgcagCTGGAAACATGCGCCATCTAATAGTTGAGGCTTGTATTGCCAGAAATCTGTTGGACACATCAGCATATTTCTGGCCAGGCTATGTGAATGGACGCATCAA atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.gtgtgtatgtgtataaaaatataaaattaaatcaattaaactatttctttttcagCTGGAAACATGCGTCATCTGATAGTTGAGGCTTGTATTGCCCGCAATCTACTGGACACATCTGCATACTTATGGCCAGGTTATGTAAATGGATGTATCAA
ctatttctttttc CT-rich tract
tataaaaatataaaat TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
attttaccaagaatttcttgtttgtaattttccatatatatgtgtgtgtgtatgtgtataaaaatataaaattaaatcaattaaactatttctttttcagCTGGAAACATGCGTCATCTGATAGTTGAGGCTTGTATTGCCCGCAATCTACTGGACACATCTGCATACTTATGGCCAGGTTATGTAAATGGATGTATCAA
- - - ccaagaa
- - - - - - - - - tgtttgt
- - - - - - - - - - - - - - - - - - - tatgtgt
- - - - - - - - - - - - - - - - - - - - -gtgtgtg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aaaaata
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aaattaaa