1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
...tgtagaaaaactcttcttttccatgtcaattgcaaaacattcgtagaaaaactcttcttattttgtttgtagtcaagaaagcaagtttccttttttgcagTTACTGGCCTTCATGACATGGATGAATTTGTACAATCCCAACTCTTACTTGCA
species | Glycine max |
transcript | GLYMA15G07970.4 |
intron # | 7 |
splice site | 3' |
intron type | U2 |
EST: TTTTGATGGTTGCAAGGCTGACCTAGTTGTGTGTGATGGTGCGCCTGATG TTACTGGCCTTCATGACATGGATGAATNTGTACAATCCCAACTCTTACTTGEST: gi|193323195|gb|FK291587.1|FK291587
genomic: TTTTGATGGTTGCAAGGCTGACCTAGTTGTGTGTGATGGTGCGCCTGATGgtaaagaaaa ... ttttttgcagTTACTGGCCTTCATGACATGGATGAATTTGTACAATCCCAACTCTTACTTG
EST: TTTGATGGTTGCAAGGCTGACCTAGTAGTGTGTGATGGTGCGCCTGAATG TTACTGGCCTTEST: gi|298195652|gb|HO044043.1|HO044043
genomic: TTTGATGGTTGCAAGGCTGACCTAGTTGTGTGTGATGGTGCGCCTGA-TGgtaaagaaaa ... ttttttgcagTTACTGGCCTT
EST: TTTTGATGGTTGCAAGGCTGACCTAGTTGTGTGTGATGGTGCGCCTGATG TTACTGGCCTTCATGACATGGATGEST: gi|151411265|gb|EV281076.1|EV281076
genomic: TTTTGATGGTTGCAAGGCTGACCTAGTTGTGTGTGATGGTGCGCCTGATGgtaaagaaaa ... ttttttgcagTTACTGGCCTTCATGACATGGATG
EST: TTTTGATGGTTGCAAGGCTGACCTAGTTGTGTGTGATGGTGCGCCTGATG TTACTGGCCTTCATGACATGGATGAATTTGTACAATCCCAACTCTTACTTG
genomic: TTTTGATGGTTGCAAGGCTGACCTAGTTGTGTGTGATGGTGCGCCTGATGgtaaagaaaa ... ttttttgcagTTACTGGCCTTCATGACATGGATGAATTTGTACAATCCCAACTCTTACTTG
gaaaaactcttcttattttgtttgtagtcaagaaagcaagtttccttttttgcagTTACTGGCCTTCATGACATGGATGAATTTGTACAATCCCAACTCTTACTTGCA
tttccttttttgc CT-rich tract
ttcttattttgttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tgtagaaaaactcttcttttccatgtcaattgcaaaacattcgtagaaaaactcttcttattttgtttgtagtcaagaaagcaagtttccttttttgcagTTACTGGCCTTCATGACATGGATGAATTTGTACAATCCCAACTCTTACTTGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CATGGA
- -agaaaaa
- - - - - - - - - - -catgtca
- - - - - - - - - - - - - - - - caaaaca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aaagcaag