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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gttacatgctatatatcccttgagtttgcaactattacaatggagacagagatttcttctttctgagatttgttccgcactcttgcaattgccctgtgttagttagtgatgccaacatatgtttcctgctatttctgacctttctaaatgttgtcagGCAAGAAGTGATGGATTTGGTTTACAAAAGTGGGAAATTTAGTAAAAAGTTTGAGAAATTTACAG

Basic information

species Glycine max
transcript GLYMA13G28660.1
intron # 7
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA13G28660.1 (Glycine max), 3'ss of exon 7
lower sequence: Vv05s0020g01880.t01 (Vitis vinifera), 3'ss of exon 7
gttacatgctatatatcccttgagtttgcaactattacaatggagacagagatttctt-ctttctgagatttg----ttccgcactcttgcaattgccctgtgttagttagtgatgccaacatatgtttcctgctatttctgacctttctaaatgttgt--cagGCAAGAAGTGATGGATTTGGTTTACAAAAGTGGGAAATTTAGTAAAAAGTTTGAGAAATTTACAG
                                                  | |||||| ||  |||  |||||    ||  | | |||  ||| |   | |    |  |  | ||   | |   || ||| |  ||| ||||  | || ||||| |  |  |||||| ||| | ||||| |||||| | ||||| |||||||| |||||||||||||||   |||||||
--------------------------------------------------gttttcttactcactgttatttgagtattgagaaatctaccaaatttacagataaatattattatattagc---tgcttcata-tatgtctgcaccttgtaaatttccttgcagGCAGGAATTAATGGACTTGGTTAATAAAAGCGGGAAATTCAGTAAAAAGTTTGAGGCTTTTACAG


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttagtgatgccaacatatgtttcctgctatttctgacctttctaaatgttgtcagGCAAGAAGTGATGGATTTGGTTTACAAAAGTGGGAAATTTAGTAAAAAGTTTGAGAAATTTACAG
                                       ttctaaa  putative branch site (score: 2)
                                      tttctaaat  TA-rich tract