Sequence
atgc intronic sequence ATGC exonic sequencegttggcagaatttgttttcagtaattattgttttatatttatgatagaaatatgaattcttgaatatgctcctatcttcagAAATGGGATGATCACCCTGCAATAATGGCTGTTGGTGTGGTTGATGGAACTTCAGAAGCCATCTTCCAGACTCTTATGTCGCTTGGTCCTTCAAGATCAG
Basic information
species | Glycine max |
transcript | GLYMA12G29750.1 |
intron # | 7 |
splice site | 3' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA12G29750.1 (Glycine max), 3'ss of exon 7
lower sequence: GRMZM2G069976_T01 (Zea mays), 3'ss of exon 8
gttggcagaatttgttttcagtaattattgttttatatttatg-atagaaatatgaattcttga--atatgctcctatcttcagAAATGGGATGATCACCCTGCAATAATGGCTGTTGGTGTGGTTGATGGAACTTCAGAAGCCATCTTCCAGACTCTTATGTCGCTTGGTCCTTCAAGATCAG
| | | || | || || | | || ||| || | | ||||| | | || | | | || |||| | ||||||||||| || || |||||||| |||||||||||||||| | ||| || || |||| |||||||| ||||| ||||| | |||||||| |
----gtatatcttact--caccaacgtgttgtgcatgcacatggatttattgttaaattcataataattaggttgtttcctcagTATTGGGATGATCATCCGGCTATAATGGCAGTTGGTGTGGTTGATGCGAATTCCGAGGCTGTCTTTCAGACTCTAATGTCCCTTGGCCAATCAAGATCTG
upper sequence: GLYMA12G29750.1 (Glycine max), 3'ss of exon 7
lower sequence: AT2G28320.1 (Arabidopsis thaliana), 3'ss of exon 7
gttggcagaatttgttttcagtaattattg--------ttttatatttat--gatagaaatatgaattcttgaatatgctcc-tatcttcagAAATGGGATGATCACCCTGCAATAATGGCTGTTGGTGTGGTTGATGGAACTTCAGAAGCCATCTTCCAGACTCTTATGTCGCTTGGTCCTTCAAGATCAG-
|| || | ||| || | | ||| |||| ||||| | ||| ||| || ||| | || | | | ||||| | ||||||||||| || || || |||||||||||||| ||||||||||| |||||| | || ||||| || ||| | || ||||| || ||||||||||
gtcggtatttttttcactcttaatctgttgaaaaggtattttgggtttattgaagggaatcatgttttgatgattttgttgcatgacttcacag-
upper sequence: GLYMA12G29750.1 (Glycine max), 3'ss of exon 7
lower sequence: Vv06s0004g02720.t01 (Vitis vinifera), 3'ss of exon 7
gttggcagaatttgttttcagtaattattgttttatatttatgatagaaatatgaattcttgaatatgctcctatcttcagAAATGGGATGATCACCCTGCAATAATGGCTGTTGGTGTGGTTGATGGAACTTCAGAAGCCATCTTCCAGACTCTTATGTCGCTTGGTCCTTCAAGATCAG-
||||| || |||| ||||| | | ||| ||| || || | ||||| ||||| |||||||| | ||||||||||| ||||||||||||||||| |||||||||||||| |||||||| ||||| || ||||| |||||||| |||||||| ||||||||||
gttggtag------ctttc--taattgactgcctgttgttaaaatatgaacatca--cattgaacatgctt-tatcttcaacagTGGGATGATCATCCTGCAATAATGGCTGTGGGTGTGGTTGATGGGACTTCAGAGGCCATTTTTCAGACACTTATGTCTCTTGGTCCCTCAAGATCAGA atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.attgttttatatttatgatagaaatatgaattcttgaatatgctcctatcttcagAAATGGGATGATCACCCTGCAATAATGGCTGTTGGTGTGGTTGATGGAACTTCAGAAGCCATCTTCCAGACTCTTATGTCGCTTGGTCCTTCAAGATCAG
ctcctatcttc CT-rich tract
tttatatttatgatag TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gttggcagaatttgttttcagtaattattgttttatatttatgatagaaatatgaattcttgaatatgctcctatcttcagAAATGGGATGATCACCCTGCAATAATGGCTGTTGGTGTGGTTGATGGAACTTCAGAAGCCATCTTCCAGACTCTTATGTCGCTTGGTCCTTCAAGATCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGATCA