1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
...gcgtgataatttaaactttgcaatcacgaaccatatgttgattaaagggtaacgggctttagattttaataatataatatattaatttgtttaatcgcagATATCATCCTGATCCAGTATCAGTGGTGTCAGAAGGCCCAAGCATGAATAATTACATGGCAGGATGGTTACCATGAAAGAGTGTCAAGTGTGGAGCATAA
species | Glycine max |
transcript | GLYMA11G36890.1 |
intron # | 7 |
splice site | 3' |
intron type | U2 |
EST: GGCCATGCTCTCTTTCGACCATTGGACTGTGAGCCAACCTTACAAATTGG ATATCATCCTGATCCAGTATCAGTGGTGTCAGAAGGCCCAAGCATGAATAAEST: gi|208138943|gb|GD934685.1|GD934685
genomic: GGCCATGCTCTCTTTCAACCATTGGACTGTGAGCCAACCTTACAAATTGGgtattacttt ... ttaatcgcagATATCATCCTGATCCAGTATCAGTGGTGTCAGAAGGCCCAAGCATGAATAA
EST: CCAACCTTACAAATTGG ATATCATCCTGATCCAGTATCAGTGGTGTCAGAAGGCCCAAGCATGAATAAEST: gi|18734332|gb|BM528121.1|BM528121
genomic: CCAACCTTACAAATTGGgtattacttt ... ttaatcgcagATATCATCCTGATCCAGTATCAGTGGTGTCAGAAGGCCCAAGCATGAATAA
EST: GGCCATGCTCTCTTTCAACCATTGGACTGTGAGCCAACCTTACAAATTGG ATATCATCCTGATCCAGTATCAGTGGTGTCAGAAAGCCCAAGCATGEST: gi|193560161|gb|FK518880.1|FK518880
genomic: GGCCATGCTCTCTTTCAACCATTGGACTGTGAGCCAACCTTACAAATTGGgtattacttt ... ttaatcgcagATATCATCCTGATCCAGTATCAGTGGTGTCAGAAGGCCCAAGCATG
EST: GGCCATGCTCTCTTTCAACCATTGGACTGTGAGCCAACCTTACAAATTGG ATATCATCCTGATCCAGTATCAGTGGTGTCAGAAGGCCCAAGCATGAATAAEST: gi|193644202|gb|FK592523.1|FK592523
genomic: GGCCATGCTCTCTTTCAACCATTGGACTGTGAGCCAACCTTACAAATTGGgtattacttt ... ttaatcgcagATATCATCCTGATCCAGTATCAGTGGTGTCAGAAGGCCCAAGCATGAATAA
EST: CTGTGAGCCAACCTTACAAATTGG ATATCATCCTGATCCAGTATCAGTGGTGTCAGAAGGCCCAAGCATGAATAAEST: gi|193342947|gb|FK307711.1|FK307711
genomic: CTGTGAGCCAACCTTACAAATTGGgtattacttt ... ttaatcgcagATATCATCCTGATCCAGTATCAGTGGTGTCAGAAGGCCCAAGCATGAATAA
EST: GGCCATGCTCTCTTTCAACCATTGGACTGTGAGCCAACCTTACAAATTGG ATATCATCCTGATCCAGTATCAGTGGTGTCAGAAGGCCCAAGCATGAATAA
genomic: GGCCATGCTCTCTTTCAACCATTGGACTGTGAGCCAACCTTACAAATTGGgtattacttt ... ttaatcgcagATATCATCCTGATCCAGTATCAGTGGTGTCAGAAGGCCCAAGCATGAATAA
agggtaacgggctttagattttaataatataatatattaatttgtttaatcgcagATATCATCCTGATCCAGTATCAGTGGTGTCAGAAGGCCCAAGCATGAATAATTACATGGCAGGATGGTTACCATGAAAGAGTGTCAAGTGTGGAGCATAA
tttgttt CT-rich tract
tttagattttaataat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gcgtgataatttaaactttgcaatcacgaaccatatgttgattaaagggtaacgggctttagattttaataatataatatattaatttgtttaatcgcagATATCATCCTGATCCAGTATCAGTGGTGTCAGAAGGCCCAAGCATGAATAATTACATGGCAGGATGGTTACCATGAAAGAGTGTCAAGTGTGGAGCATAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCA
- - - - - - - - - - caatcac
- - - - - - - - - - - - - - - ccatatg