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gtttggtcaaagtatattaatgctgtaatgcttttgatattccatgcagtattcttttcaagtgtcaattttattgtaatgtaatctatacaaatgtgtagGAGGAATCTTATGTAGAATTCCTGCGTATAAGAAGAGTTCCCCTTCAAGAGAGAATATGTTCTGATGATGCTACCGATGTTGTTCCTCAG
species | Glycine max |
transcript | GLYMA11G35640.1 |
intron # | 7 |
splice site | 3' |
intron type | U2 |
EST: CTGCTCGGCTGGGTAAACAAGGTCATGCTGTTGTCTTCTTATTACCAAAG GAGGAATCTTATGTAGAATTCCTGCGTATAAGAAGAGTTCCCCTTCAAGAGEST: gi|208318761|gb|GE111508.1|GE111508
genomic: CTGCTCGGCTGGGTAAACAAGGTCATGCTGTTGTCTTCTTATTACCAAAGgtttggtcaa ... aaatgtgtagGAGGAATCTTATGTAGAATTCCTGCGTATAAGAAGAGTTCCCCTTCAAGAG
EST: CTGCTCGGCTGGGTAAACAAGGTCATGCTGTTGTCTTCTTATTACCAAAG GAGGAATCTTATGTAGAATTCCTGCGTATAAGAAGAGTTCCCCCTTCAAGA
genomic: CTGCTCGGCTGGGTAAACAAGGTCATGCTGTTGTCTTCTTATTACCAAAGgtttggtcaa ... aaatgtgtagGAGGAATCTTATGTAGAATTCCTGCGTATAAGAAGAGTTCCCC-TTCAAGA
cagtattcttttcaagtgtcaattttattgtaatgtaatctatacaaatgtgtagGAGGAATCTTATGTAGAATTCCTGCGTATAAGAAGAGTTCCCCTTCAAGAGAGAATATGTTCTGATGATGCTACCGATGTTGTTCCTCAG
aattttattgtaatgt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtttggtcaaagtatattaatgctgtaatgcttttgatattccatgcagtattcttttcaagtgtcaattttattgtaatgtaatctatacaaatgtgtagGAGGAATCTTATGTAGAATTCCTGCGTATAAGAAGAGTTCCCCTTCAAGAGAGAATATGTTCTGATGATGCTACCGATGTTGTTCCTCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGA