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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatcattaattttctattgttttacactttcaatttgccatagttagtccattaatttgtttctaaaagatgtgtggaactttggcagGTCCATTCACCTTCTGTTCTATTGGATCCTCTTTGAGAATGTGATGTCTTTGCACCGTACCAAGGCAACATTTATAGGTCTCTTAGAGTATGGGAGGGCT

Basic information

species Glycine max
transcript GLYMA11G19490.1
intron # 7
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA11G19490.1 (Glycine max), 3'ss of exon 7
lower sequence: AT5G22740.1 (Arabidopsis thaliana), 3'ss of exon 7
----------------gtatcattaat--tttctattgttttacactttcaatttgccata-gttagtccattaattt--gtttctaaaagatgtgtggaact--ttggcagGTCCATTCACCTTCTGTTCTATTGGATCCTCTTTGAGAATGTGATGTCTTTGCACCGTACCAAGGCAACATTTATAGGTCTCTTAGAGTATGGGAGGGCT
                |||||   | |  ||     |||||    | |    ||    ||| || |    | | | ||    | ||     || | ||    |  |    ||||| ||||| || |||||||||||||| || || ||||||||||||||  ||||||| || ||||| ||  | || ||||| || |||   || ||||||
gtatattctgttccttgtatctcaagtcattatctctgtttctttcatagggttgcttatatgtcacgtaactgagtttaaatccttttctatttctgattttgttcaaaagGTCAATTCATCTGCTGTTCTATTGGATTCTATTCGAGAATGTGATGTCGCTGCACCGGACAAAGGCCACTCTCATTGGTCTGTTTGAGGCAGGAAGGGCT

upper sequence: GLYMA11G19490.1 (Glycine max), 3'ss of exon 7
lower sequence: Vv06s0061g01230.t01 (Vitis vinifera), 3'ss of exon 7
---gtatcattaattttctattgttttacactttcaatttgccatagttag--tccat------taatttgtttctaaaagatgtgtggaactttggcagGTCCATTCACCTTCTGTTCTATTGGATCCTCTTTGAGAATGTGATGTCTTTGCACCGTACCAAGGCAACATTTATAGGTCTCTTAGAGTATGGGAGGGCT
      |  |    | || |   | |||     |  |||||  || |  |   |||||      ||  ||||| ||||      | |   |  || ||||||| |||||||| |||||||| ||||| || |||||||||||||||||||| ||||| |||||||| ||  |||| |||||  ||||    ||||| |||
gtccacttctcctctctccaccatcttatgtgatttatttggtatcgaaaagctccataacatatatgttgttcctaagctcaatttcttaaatttgcagGTCAATTCACCTACTGTTCTACTGGATTCTTTTTGAGAATGTGATGTCTTTCCACCGGACCAAGGCCACTCTTATCGGTCTGCTAGAAGCAGGGAGAGCT
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|21888941|gb|BQ742154.1|BQ742154
EST:     CATCACCATTCTCAATTCAGTTGGAACACCAAG                         GTCCATTCACCTTCTGTTCTATTGGATCCTCTTTGAGAATGTGATGTCTTT
genomic: CATCACCATTCTCAATTCAGTTGGAACACCAAGgtatcattaa ... actttggcagGTCCATTCACCTTCTGTTCTATTGGATCCTCTTTGAGAATGTGATGTCTTT






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tttgccatagttagtccattaatttgtttctaaaagatgtgtggaactttggcagGTCCATTCACCTTCTGTTCTATTGGATCCTCTTTGAGAATGTGATGTCTTTGCACCGTACCAAGGCAACATTTATAGGTCTCTTAGAGTATGGGAGGGCT
                           ttctaaa  putative branch site (score: 2)
                 attaatttgtttctaa  TA-rich tract