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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...ctaattatttttggttacctctgtttatttgcagaattctacttagttaaagttgttcaattgacttcaatatttatttcttaccatattgtttgtgcagGTGGTAATGCAGATTATGCTATGGATATGCACCAGAAAGAACAACTTCATGACAATACTGTGCCAATGATGCAATCTCAGCATTTCTCT

Basic information

species Glycine max
transcript GLYMA11G15480.1
intron # 7
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA11G15480.1 (Glycine max), 3'ss of exon 7
lower sequence: Vv06s0004g03940.t01 (Vitis vinifera), 3'ss of exon 7
ctaattatttttggtt--acctctgtttatttgcagaattctacttagttaaagttgttcaattgacttcaatatttatttcttaccatattgtttgtgcagGTGGTAATGCAGATTATGCTATGGATATGCACCAGAAAGAACAACTTCATGACAATACTGTGCCAATGATGCAATCTCAGCATTTCTCT
|  ||  ||  |  ||  |  ||||    |||     |  || |||  || || || || |  ||  ||  |   | |     || | |     |||||||||||||||||| ||||||||||||||| ||||||||||||||||| ||||||||||||||||  | ||||||||||||||||| ||||||
catatatttgataattggatttctgaaggtttatttgag-ctgctttcttgaatttcttta-ctgctttggagcatcacaaactatctttgaacttgtgcagGTGGTAATGCTGATTATGCTATGGATTTGCACCAGAAAGAACAATTTCATGACAATACTGTATCTATGATGCAATCTCAGCACTTCTCT


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gttaaagttgttcaattgacttcaatatttatttcttaccatattgtttgtgcagGTGGTAATGCAGATTATGCTATGGATATGCACCAGAAAGAACAACTTCATGACAATACTGTGCCAATGATGCAATCTCAGCATTTCTCT
                                ttcttac  putative branch site (score: 2)
                       aatatttatttcttac  TA-rich tract