1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
...aattctaacattttatgtccacattcacatgcaatgtcatgttggcaacaaatctttgatggaacctgagcatctgattgtggcgtccctgccttttcagGAGGCCGTGTCTTTAGTACAAAATATCACAGATGCAGAAGTGGCGTCCAGAGAACTTATAAAAGAAGCTTATGCACGAGGAAGCTCAGATAACATCACCT
species | Glycine max |
transcript | GLYMA10G43810.4 |
intron # | 7 |
splice site | 3' |
intron type | U2 |
EST: TGATGGCCTCTTGGAATGTCATATCAAACAAG GAGGCCGTGTCTTTAGTACAAAATATCACAGATGCAGAAGTGGCGTCCAGAEST: gi|208086304|gb|GD881970.1|GD881970
genomic: TGATGGCCTC-TGGAATGTCATATCAAACAAGgtgagactat ... gccttttcagGAGGCCGTGTCTTTAGTACAAAATATCACAGATGCAGAAGTGGCGTCCAGA
EST: ATTTTATTATAATTGCTAGTGATGGCCTCTGGAATGTCATATCAAACAAG GAGGCCGTGTCTTTAGTACAAAATATCACAGATGCAGAAGTGGCGTCCAGA
genomic: ATTTTATTATAATTGCTAGTGATGGCCTCTGGAATGTCATATCAAACAAGgtgagactat ... gccttttcagGAGGCCGTGTCTTTAGTACAAAATATCACAGATGCAGAAGTGGCGTCCAGA
caacaaatctttgatggaacctgagcatctgattgtggcgtccctgccttttcagGAGGCCGTGTCTTTAGTACAAAATATCACAGATGCAGAAGTGGCGTCCAGAGAACTTATAAAAGAAGCTTATGCACGAGGAAGCTCAGATAACATCACCT
atctgat putative branch site (score: 4)
cgtccctgccttttc putative PPT
aatcttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| aattctaacattttatgtccacattcacatgcaatgtcatgttggcaacaaatctttgatggaacctgagcatctgattgtggcgtccctgccttttcagGAGGCCGTGTCTTTAGTACAAAATATCACAGATGCAGAAGTGGCGTCCAGAGAACTTATAAAAGAAGCTTATGCACGAGGAAGCTCAGATAACATCACCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTCA
- - - - - - - -tgtccac
- - - - - - - - - - - - - acatgca
- - - - - - - - - - - - - - - - - - - -tgttggc
- - - - - - - - - - - - - - - - - - - - - - - aacaaatc
- - - - - - - - - - - - - - - - - - - - - - - - - - - -ttgatgg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aacctga
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gcatctg