Sequence
atgc intronic sequence ATGC exonic sequence...tgatttatggttgttactttgtagttttccttaagacatccttatttgagagatacatttactgcatagcagtgggaataattataattttgtttgttagGCACTACATTATGATGTTCGAAGAGGTCCACACAGTGTTGGGTCTCATGTACGTGATGCTGCTGCATATGTATGTTGGGCGTTTGGACGTGCATATTATC
Basic information
species | Glycine max |
transcript | GLYMA10G42560.1 |
intron # | 7 |
splice site | 3' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA10G42560.1 (Glycine max), 3'ss of exon 7
lower sequence: AT3G60740.1 (Arabidopsis thaliana), 3'ss of exon 7
---------tgatttatggttgt---tactt-----tgtagttttc-cttaagacatccttatttgagagatacatt-tactgcatag---cagtgggaataattataattttgtttgttagGCACTACATTATGATGTTCGAAGAGGTCCACACAGTGTTGGGTCTCATGTACGTGATGCTGCTGCATATGTATGTTGGGCGTTTGGACGTGCATATTATC
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gtcgtactctatttcatgcacatgaatacttatatctatagtcatcgcatacgaagaaatggcatcacccacccacaatagtgcagaagttctgtggatttacatctaaatttcatttacagGCACTCCATTATGATGTTCGCCGAGGTCCACACAGTGTTGGATCTCATGTGCGTGATGCAGCTGCCTATGTTTGTTGGGCATTTGGGCGCGCCTATTCCC
upper sequence: GLYMA10G42560.1 (Glycine max), 3'ss of exon 7
lower sequence: Vv15s0048g00470.t01 (Vitis vinifera), 3'ss of exon 7
----tgatttatggttgttactttgtagttttccttaagacatccttatttgagagatacatttactgcatagcagtgggaataattataattttgtttgttagGCACTACATTATGATGTTCGAAGAGGTCCACACAGTGTTGGGTCTCATGTACGTGATGCTGCTGCATATGTATGTTGGGCGTTTGGACGTGCATATTATC
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ctgtttgtttatttcactccctcttgagggagctttcatccttctctatatgaga--tgctgctactacaacatact--gatcactaatagttcttcttaacagGCACTACATTATGATATTCGAAGAGGTCCACATAGTGTTGGATCCCATGTGCGTGATGCTGCTGCCTATGTTTGTTGGGCATTTGGCCGTGCGTATTATC
upper sequence: GLYMA10G42560.1 (Glycine max), 3'ss of exon 7
lower sequence: PP1S281_64V6.1 (Physcomitrella patens), 3'ss of exon 10
--tgatttatgg----ttgttactttgtagttttccttaagacatccttatttgagagatacatttactgcatagcagtgggaataattataattttgtttgttagGCACTACATTATGATGTTCGAAGAGGTCCACACAGTGTTGGGTCTCATGTACGTGATGCTGCTGCATATGTATGTTGGGCGTTTGGACGTGCATATTATC
| ||| | | | | | || || | |||| |||| | | || ||| ||| | | | | || || || || |||| || ||||||||||| ||||||||||| ||||| ||||| |||||||| || ||||| || ||||||||||| ||||| |||| | ||||||| |
gttcttttgtaaaacttcttcaataaataattgttacaaagagtaggatattaacgtgtta-gtttgttgccttctcatttaagt-----caagttggtgtggcagGCCCTCCATTATGATGTGCGAAGAGGTCCTCACAGCGTTGGATCTCATGTTCGAGATGCAGCGGCATATGTATGCTGGGCATTTGTGAGAGCATATTCTT atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.ttgagagatacatttactgcatagcagtgggaataattataattttgtttgttagGCACTACATTATGATGTTCGAAGAGGTCCACACAGTGTTGGGTCTCATGTACGTGATGCTGCTGCATATGTATGTTGGGCGTTTGGACGTGCATATTATC
ttttgttt CT-rich tract
aataattataattttg TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
tgatttatggttgttactttgtagttttccttaagacatccttatttgagagatacatttactgcatagcagtgggaataattataattttgtttgttagGCACTACATTATGATGTTCGAAGAGGTCCACACAGTGTTGGGTCTCATGTACGTGATGCTGCTGCATATGTATGTTGGGCGTTTGGACGTGCATATTATC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC
- - - - ggttgtt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tactgca