Sequence
atgc intronic sequence ATGC exonic sequence...cctacatggtttatatttgtatatttatgtatgcaacactaaacataaagaagataaaagaaacagtgatgatccaaccttcctctatatcgaattgcagGGGGTAATGGTGCCACTGGAGCAATAGCCGGAGGTGTTGCCGCTGGTGCTGCTCTATTATTTGCTGCACCTGCAATTGCATTTGCCTGGTGGCGTCGAAG
Basic information
species | Glycine max |
transcript | GLYMA10G36280.1 |
intron # | 7 |
splice site | 3' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA10G36280.1 (Glycine max), 3'ss of exon 7
lower sequence: GRMZM2G115420_T01 (Zea mays), 3'ss of exon 7
cctacatggtttatatttgtatatttatgtatgcaacactaaacataaagaagataaaagaaacagtgatgatccaaccttcctctatatcgaattgc-agGGGGTAATGGTGCCACTGGAGCAATAGCCGGAGGTGTTGCCGCTGGTGCTGCTCTATTATTTGCTGCACCTGCAATTGCATTTGCCTGGTGGCGTCGAAG---
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---gtaggttttgaatct----acttttattttcattaatacact-----aaaactttagcattttggatgacacgtacttcctggatttatgtctactattagGTGCTTCTAGCACTGGAGCAATAGCTGGAGGTGTTGCTGCTGGTGCAGCATTGGTGTTTGCTGTTCCTGCAATTGCATTTGCAATGTGGCGCCGTCGTAA
upper sequence: GLYMA10G36280.1 (Glycine max), 3'ss of exon 7
lower sequence: GRMZM2G150024_T03 (Zea mays), 3'ss of exon 7
cctacatggttta---tatttgtatatttatgtatgcaacactaaa-cataaagaagataaaagaaacagtgatgatccaaccttcctctatatcgaattgcagGGGGTAATGGTGCCACTGGAGCAATAGCCGGAGGTGTTGCCGCTGGTGCTGCTCTATTATTTGCTGCACCTGCAATTGCATTTGCCTGGTGGCGTCGAAG---
|| | |||| ||||| ||| | || | | |||||||| | | | | | | || ||| ||| || || || | | | ||| | || | |||||||||| || ||||||||||| ||||||||||| | | ||||||| || |||||||||||||| |||||| || |
-gtaggttttttaatctatttctattctcat---tactacactaaaactttagcattctggatgacacattgac------actacttcctggattgtctactattagGTGCTTCTGGCCCTGGAGCAATCGCTGGAGGTGTTGCTGCTGGTGCTGCATTGGTTTTTGCTGTTCCAGCAATTGCATTTGCAATGTGGCGCCGTCGTAA
upper sequence: GLYMA10G36280.1 (Glycine max), 3'ss of exon 7
lower sequence: Vv18s0164g00070.t01 (Vitis vinifera), 3'ss of exon 7
-----cctacatggtttatatttgt-atatttatgtatgcaacactaaacataaagaagataaaagaaacagtgatgatccaaccttcctctatatcgaattgcagGGGGTAATGGTGCCACTGGAGCAATAGCCGGAGGTGTTGCCGCTGGTGCTGCTCTATTATTTGCTGCACCTGCAATTGCATTTGCCTGGTGGCGTCGAAG
| | | | | | | | | | ||||| || || | | || || | ||| | || || || || | | ||| |||| || || ||||||| |||||||| || || ||||| || |||||||||||| || |||||||||| |||||||||| ||||| |||||||| |||||
agaaaagaaaaagactggtttctcttacagttatg---acagcattctttagaagagttatcatccttgcaggattattctaatctctctttcaac---atttcagGAGGGAACAGTGCCACAGGAGCAATTGCTGGGGGTGTGGCTGCTGGTGCTGCTTTACTATTTGCTGCTCCTGCAATTGGTTTTGCATGGTGGCGCCGAAG atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.taaagaagataaaagaaacagtgatgatccaaccttcctctatatcgaattgcagGGGGTAATGGTGCCACTGGAGCAATAGCCGGAGGTGTTGCCGCTGGTGCTGCTCTATTATTTGCTGCACCTGCAATTGCATTTGCCTGGTGGCGTCGAAG
ccttcctctatatc CT-rich tract
ataaaagaaa TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
cctacatggtttatatttgtatatttatgtatgcaacactaaacataaagaagataaaagaaacagtgatgatccaaccttcctctatatcgaattgcagGGGGTAATGGTGCCACTGGAGCAATAGCCGGAGGTGTTGCCGCTGGTGCTGCTCTATTATTTGCTGCACCTGCAATTGCATTTGCCTGGTGGCGTCGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGTGG
cctacat
- - - - - - - - - - - - - - gtatgca
- - - - - - - - - - - - - - - - - - - ctaaaca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - aaagaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - agtgatg