1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
gtaggaatttgttcactaaaaaaatttgcttgctttataccccagtataacaaaaatcattaagcaaatgacttgacataatatatttgacggtaaatgttttatgtgtttctatttttttattacagGAAAGTTACCATAACAGGATCCCAGAGAGCAATACGTACAGCTGAATCTATGATATTGCAGAAGGTTGCTTATGCTACCGAGAGGGGGGTGATGGAGTAG
species | Glycine max |
transcript | GLYMA10G34220.1 |
intron # | 7 |
splice site | 3' |
intron type | U2 |
EST: AGGATAAAGATATCAGATAGAGGTGATTACGTATCTGGAACAACCGATAG GAAAGTTACCATAACAGGATCCCAGAGAGCAATACGTACAGCTGAATCTATEST: gi|22927860|gb|BU544999.1|BU544999
genomic: AGGATAAAGATATCAGATAGAGGTGATTACGTATCTGGAACAACCGATAGgtaggaattt ... tttattacagGAAAGTTACCATAACAGGATCCCAGAGAGCAATACGTACAGCTGAATCTAT
EST: AGGATAAAGATATCAGATAGAGGTGATTACGTATCTGGAACAACCGATAG GAAAGTTACCATAACAGGATCCCAGAGAGCAATACGTACAGCTGAATCTATEST: gi|193520218|gb|FK474667.1|FK474667
genomic: AGGATAAAGATATCAGATAGAGGTGATTACGTATCTGGAACAACCGATAGgtaggaattt ... tttattacagGAAAGTTACCATAACAGGATCCCAGAGAGCAATACGTACAGCTGAATCTAT
EST: AGGATAAAGATATCAGATAGAGGTGATTACGTATCTGGAACAACCGATAG GAAAGTTACCATAACAGGATCCCAGAGAGCAATACGTACAGCTGAATCTATEST: gi|15202846|gb|BI425623.1|BI425623
genomic: AGGATAAAGATATCAGATAGAGGTGATTACGTATCTGGAACAACCGATAGgtaggaattt ... tttattacagGAAAGTTACCATAACAGGATCCCAGAGAGCAATACGTACAGCTGAATCTAT
EST: AGGATAAAGATATCAGATAGAGGTGATTACGTATCTGGAACAACCGATAG GAAAGTTACCATAACAGGATCCCAGAGAGCAATACGTACAGCTGAATCTATEST: gi|6071922|gb|AW101309.1|AW101309
genomic: AGGATAAAGATATCAGATAGAGGTGATTACGTATCTGGAACAACCGATAGgtaggaattt ... tttattacagGAAAGTTACCATAACAGGATCCCAGAGAGCAATACGTACAGCTGAATCTAT
EST: GAACAACCGATAG GAAAGTTACCATAACAGGATCCCAGAGAGCAATACGTACAGCTGAATCTATEST: gi|6502014|gb|AW203387.1|AW203387
genomic: GAACAACCGATAGgtaggaattt ... tttattacagGAAAGTTACCATAACAGGATCCCAGAGAGCAATACGTACAGCTGAATCTAT
EST: AGGATAAAGATATCAGATAGAGGTGATTACGTATCTGGAACAACCGATAG GAAAGTTACCATAACAGGATCCCAGAGAGCAATACGTACAGCTGAATCTATEST: gi|192308183|gb|FK001281.1|FK001281
genomic: AGGATAAAGATATCAGATAGAGGTGATTACGTATCTGGAACAACCGATAGgtaggaattt ... tttattacagGAAAGTTACCATAACAGGATCCCAGAGAGCAATACGTACAGCTGAATCTAT
EST: AGGATAAAGATATCAGATAGAGGTGATTACGTATCTGGAACAACCGATAG GAAAGTTACCATAACAGGATCCCAGAGAGCAATACGTACAGCTGAATCTATEST: gi|192303155|gb|FG997731.1|FG997731
genomic: AGGATAAAGATATCAGATAGAGGTGATTACGTATCTGGAACAACCGATAGgtaggaattt ... tttattacagGAAAGTTACCATAACAGGATCCCAGAGAGCAATACGTACAGCTGAATCTAT
EST: AGGATAAAGATATCAGATAGAGGTGATTACGTATCTGGAACAACCGATAG GAAAGTTACCATAACAGGATCCCAGAGAGCAATACGTACAGCTGAATCTATEST: gi|193665257|gb|FK607969.1|FK607969
genomic: AGGATAAAGATATCAGATAGAGGTGATTACGTATCTGGAACAACCGATAGgtaggaattt ... tttattacagGAAAGTTACCATAACAGGATCCCAGAGAGCAATACGTACAGCTGAATCTAT
EST: AGGATAAAGATATCAGATAGAGGTGATTACGTATCTGGAACAACCGATAG GAAAGTTACCATAACAGGATCCCAGAGAGCAATACGTACAGCTGAATCTATEST: gi|7235040|gb|AW570431.1|AW570431
genomic: AGGATAAAGATATCAGATAGAGGTGATTACGTATCTGGAACAACCGATAGgtaggaattt ... tttattacagGAAAGTTACCATAACAGGATCCCAGAGAGCAATACGTACAGCTGAATCTAT
EST: AGGATAAAGATATCAGATAGAGGTGATTACGTATCTGGAACAACCGATAG GAAAGTTACCATTACAGGATCCCAGAGAGCAATACGTACAGCTGAATCTATEST: gi|7590589|gb|AW706338.1|AW706338
genomic: AGGATAAAGATATCAGATAGAGGTGATTACGTATCTGGAACAACCGATAGgtaggaattt ... tttattacagGAAAGTTACCATAACAGGATCCCAGAGAGCAATACGTACAGCTGAATCTAT
EST: TTACGTATCTGGAACAACCGATAG GAAAGTTACCATAACAGGATCCCAGAGAGCAATACGTACAGCTGAATCTATEST: gi|24205232|gb|BU964485.1|BU964485
genomic: TTACGTATCTGGAACAACCGATAGgtaggaattt ... tttattacagGAAAGTTACCATAACAGGATCCCAGAGAGCAATACGTACAGCTGAATCTAT
EST: AGGATAAAGATATCAGATAGAGGTGATTACGTATCTGGAACAACCGATAG GAAAGTTACCATAACAGGATCCCAGAGAGCAATACGTACAGCTGAATCTAT
genomic: AGGATAAAGATATCAGATAGAGGTGATTACGTATCTGGAACAACCGATAGgtaggaattt ... tttattacagGAAAGTTACCATAACAGGATCCCAGAGAGCAATACGTACAGCTGAATCTAT
tgacataatatatttgacggtaaatgttttatgtgtttctatttttttattacagGAAAGTTACCATAACAGGATCCCAGAGAGCAATACGTACAGCTGAATCTATGATATTGCAGAAGGTTGCTTATGCTACCGAGAGGGGGGTGATGGAGTAG
atttgac putative branch site (score: 4)
tttctatttttttatt putative PPT
taaatgttttatgtgt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaggaatttgttcactaaaaaaatttgcttgctttataccccagtataacaaaaatcattaagcaaatgacttgacataatatatttgacggtaaatgttttatgtgtttctatttttttattacagGAAAGTTACCATAACAGGATCCCAGAGAGCAATACGTACAGCTGAATCTATGATATTGCAGAAGGTTGCTTATGCTACCGAGAGGGGGGTGATGGAGTAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GATGGA