1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
...taggcccaaacagggacaaattcaaagggggaggtctgctggccacccttgccacacatgttctcactttctttctttctctcttttttgtgactaaaagTGATAGAACGGGGAGACACCCCCAATACCTACTGGGCAAGGCGCCAATGACCCATCCAAAAGATTACTGCACAAGCTTAAACCATAAGCAATTTTACCAA
species | Glycine max |
transcript | GLYMA10G05560.2 |
intron # | 7 |
splice site | 3' |
intron type | U2 |
EST: TGTCTA-CCCTGACTTTGAACCCAT- TGATAGAACGGGGAGACACCCCCCATACCTACTGGGCAAGGCGCCAATGAC
genomic: TGTCTAGCCCTGACTTTGAACCCATCgtaagtttca ... tgactaaaagTGATAGAACGGGGAGACACCCCCAATACCTACTGGGCAAGGCGCCAATGAC
cccttgccacacatgttctcactttctttctttctctcttttttgtgactaaaagTGATAGAACGGGGAGACACCCCCAATACCTACTGGGCAAGGCGCCAATGACCCATCCAAAAGATTACTGCACAAGCTTAAACCATAAGCAATTTTACCAA
ttctcac putative branch site (score: 2)
cacatgttctcacttt CT-rich tract
tctttttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| taggcccaaacagggacaaattcaaagggggaggtctgctggccacccttgccacacatgttctcactttctttctttctctcttttttgtgactaaaagTGATAGAACGGGGAGACACCCCCAATACCTACTGGGCAAGGCGCCAATGACCCATCCAAAAGATTACTGCACAAGCTTAAACCATAAGCAATTTTACCAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCAA
- - -ccaaaca
- - - - - - - - - - - - - gggggag
- - - - - - - - - - - - - - - - - -ctgctgg