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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatggcctttatcttattattatttgccttttggtataaatattattgattggttaatacctgtagGTATAATGGATCAGAAGGCCTCCATACTGAAGTTGCAGAATTTGAAAGGGACAAGGACTGTCTTGTGTGTGGTCCTGGTATACGAATTGAACTAGACCCT

Basic information

species Glycine max
transcript GLYMA07G38770.1
intron # 7
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|254324592|gb|GR834017.1|GR834017
EST:     CAATTAAAGA-TGCAACAGAGTGCAGCAAAACTTTGTCGAACTATTTAAC                         GTATAATGGATCAGAAGGCCTCCATACTGAAGTTGCAGAATTTGAAAGGGA
genomic: C-ATTAAAGATTGCAACAGAGTGCAGCAAAACTTTGTCGAACTATTTAACgtatggcctt ... atacctgtagGTATAATGGATCAGAAGGCCTCCATACTGAAGTTGCAGAATTTGAAAGGGA
EST: gi|193546623|gb|FK500980.1|FK500980
EST:     CAATTAAAGA-TGCAACAGAGTGCAGCAAAACTTTGTCGAACTATTTAAC                         GTATAATGGATCAGAAGGCCTCCATACTGAAGTTGCAGAATTTGAAAGGGA
genomic: C-ATTAAAGATTGCAACAGAGTGCAGCAAAACTTTGTCGAACTATTTAACgtatggcctt ... atacctgtagGTATAATGGATCAGAAGGCCTCCATACTGAAGTTGCAGAATTTGAAAGGGA
EST: gi|51335050|gb|CO978916.1|CO978916
EST:     ACATTAAAGATTGCAACAGAGTGCAGCAAAACTTTGTCGAACTATTTAAC                         GTATAATGGATCAGAAGGCCTCCATACTGAAGTTGCAGAATTTGAAAGGGA
genomic: ACATTAAAGATTGCAACAGAGTGCAGCAAAACTTTGTCGAACTATTTAACgtatggcctt ... atacctgtagGTATAATGGATCAGAAGGCCTCCATACTGAAGTTGCAGAATTTGAAAGGGA
EST: gi|37995116|gb|CF806705.1|CF806705
EST:     GAACTATTTAAC                         GTATAATGGATCAGAAGGCCTCCATACTGAAGTTGCAGAATTTGAAAGGGA
genomic: GAACTATTTAACgtatggcctt ... atacctgtagGTATAATGGATCAGAAGGCCTCCATACTGAAGTTGCAGAATTTGAAAGGGA
EST: gi|254322097|gb|GR837511.1|GR837511
EST:     ACATTAAAGATTGCAACAGAGTGCAGCAAAACTTTGTCGAACTATTTAAC                         GTATAATGGATCAGAAGGCCTCCATACTGAAGTTGCAGAATTTGAAAGGGA
genomic: ACATTAAAGATTGCAACAGAGTGCAGCAAAACTTTGTCGAACTATTTAACgtatggcctt ... atacctgtagGTATAATGGATCAGAAGGCCTCCATACTGAAGTTGCAGAATTTGAAAGGGA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tcttattattatttgccttttggtataaatattattgattggttaatacctgtagGTATAATGGATCAGAAGGCCTCCATACTGAAGTTGCAGAATTTGAAAGGGACAAGGACTGTCTTGTGTGTGGTCCTGGTATACGAATTGAACTAGACCCT
                       tataaatattattgat  TA-rich tract