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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...ttgctagaatatgggaaagaaatttgataatattatagcatgtcatttgtgcttgacttttttgtttgctcagtactggttttattttgtttgcttgcagAGTGTTGAAGAAGCTGAGTGTCATCGGGCATATGATTCTGCTACTGATGTTTATATGTCTTCTTTTGACCGCTCATCACCACCTGAGGAA

Basic information

species Glycine max
transcript GLYMA07G32290.2
intron # 7
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA07G32290.2 (Glycine max), 3'ss of exon 7
lower sequence: Vv10s0003g00370.t01 (Vitis vinifera), 3'ss of exon 7
----ttgctagaatatgggaaagaaatttgataatattatagcatgtcatttgtgcttgacttttttgtttgctcagtactggttttattttgtttgcttgcagAGTGTTGAAGAAGCTGAGTGTCATCGGGCATATGATTCTGCTACTGATGTTTATATGTCTTCTTTTGACCGCTCATCACCACCTGAGGAA
      || ||  |||     || | ||   |    |||||  | |||     |  || | ||| |  |||    ||   | |  ||||| | ||   |||||||||||||||||||| ||||| |   | || |||||||| || |||||  ||||||||||| ||||||||||  ||   || |||||||||
atggaagcaaggctataccgcagcagtt--gtttctttatataaggtcgaagat-tttcattttatactttcacgagggtttgaattattct-ttgttttgcagAGTGTTGAAGAAGCAGAGTGCCGAAGAGCTTATGATTCAGCAACTGAAATTTATATGTCTGCTTTTGACCGAACAAAGCCTCCTGAGGAA


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tttgtgcttgacttttttgtttgctcagtactggttttattttgtttgcttgcagAGTGTTGAAGAAGCTGAGTGTCATCGGGCATATGATTCTGCTACTGATGTTTATATGTCTTCTTTTGACCGCTCATCACCACCTGAGGAA
     gcttgac  putative branch site (score: 4)
                                       ttttgttt  putative PPT
                                  ttttattttgttt  TA-rich tract