1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
...atatggtggacagcttaacttattttaactttagtagtatatatatgctatttacatgtgtaatagtgggattctgctgatttatgataaattgttgtagATACAGCGATGGAAACAGAAGCACCAGTTGAAGTTTCAGGCAAGAAAGCCAAGAAGAAGAAGCATAAAGCTTCCGTTACAGATGATGGTGATAATATGGC
species | Glycine max |
transcript | GLYMA07G11560.1 |
intron # | 7 |
splice site | 3' |
intron type | U2 |
EST: TAAGAACATAGATGTCATGAAGTCTGCTATTGAAAGTGTTGAAACCGAAT ATACAGCGATGGAAACAGAAGCACCAGTTGAAGTTTCAGGCAAGAAAGCCAEST: gi|193614479|gb|FK563231.1|FK563231
genomic: TAAGAACATAGATGTCATGAAGTCTGCTATTGAAAGTGTTGAAACCGAATgtaagaatgg ... attgttgtagATACAGCGATGGAAACAGAAGCACCAGTTGAAGTTTCAGGCAAGAAAGCCA
EST: TAAGAACATAGATGTCATGAAGTCTGCTATTGAAAGTGTTGAAACCGAAT ATACAGCGATGGAAACAGAAGCACCAGTTGAAGTTTCAGGCAAGAAAGCCAEST: gi|208190055|gb|GD994021.1|GD994021
genomic: TAAGAACATAGATGTCATGAAGTCTGCTATTGAAAGTGTTGAAACCGAATgtaagaatgg ... attgttgtagATACAGCGATGGAAACAGAAGCACCAGTTGAAGTTTCAGGCAAGAAAGCCA
EST: TAAGAACATAGATGTCATGAAGTCTGCTATTGAAAGTGTTGAAACCGAAT ATACAGCGATGGAAACAGAAGCACCAGTTGAAGTTTCAGGCAAGAAAGCCAEST: gi|208316053|gb|GE111007.1|GE111007
genomic: TAAGAACATAGATGTCATGAAGTCTGCTATTGAAAGTGTTGAAACCGAATgtaagaatgg ... attgttgtagATACAGCGATGGAAACAGAAGCACCAGTTGAAGTTTCAGGCAAGAAAGCCA
EST: TAAGAACATAGATGTCATGAAGTCTGCTATTGAAAGTGTTGAAACCGAAT ATACAGCGATGGAAACAGAAGCACCAGTTGAAGTTTCAGGCAAGAAAGCCAEST: gi|192317143|gb|FK007882.1|FK007882
genomic: TAAGAACATAGATGTCATGAAGTCTGCTATTGAAAGTGTTGAAACCGAATgtaagaatgg ... attgttgtagATACAGCGATGGAAACAGAAGCACCAGTTGAAGTTTCAGGCAAGAAAGCCA
EST: TAAGAACATAGATGTCATGAAGTCTGCTATTGAAAGTGTTGAAACCGAAT ATACAGCGATGGAAACAGAAGCACCAGTTGAAGTTTCAGGCAAGAAAGCCA
genomic: TAAGAACATAGATGTCATGAAGTCTGCTATTGAAAGTGTTGAAACCGAATgtaagaatgg ... attgttgtagATACAGCGATGGAAACAGAAGCACCAGTTGAAGTTTCAGGCAAGAAAGCCA
tgctatttacatgtgtaatagtgggattctgctgatttatgataaattgttgtagATACAGCGATGGAAACAGAAGCACCAGTTGAAGTTTCAGGCAAGAAAGCCAAGAAGAAGAAGCATAAAGCTTCCGTTACAGATGATGGTGATAATATGGC
tgctgat putative branch site (score: 3)
atttatgataaattgt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| atatggtggacagcttaacttattttaactttagtagtatatatatgctatttacatgtgtaatagtgggattctgctgatttatgataaattgttgtagATACAGCGATGGAAACAGAAGCACCAGTTGAAGTTTCAGGCAAGAAAGCCAAGAAGAAGAAGCATAAAGCTTCCGTTACAGATGATGGTGATAATATGGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGATG
- -tggtgga
- - - - - - - - - - - - - - - - - - - - -tatatgc
- - - - - - - - - - - - - - - - - - - - - - - - - - -acatgtg