1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
...tatgttccatactgtcactgctagtgttgtcttattattcataactgtacttcatcatggtctactgactgattcttttcctgccaaacctttaatgcagAAGAGGATGCTTTCATCATATGACACCGACTCTGACAAGTCGAAGTTGGTTAATATTTGCAGCAAATCCCTCACTAATAAATCTGAGAGTGCTGTTTTGT
species | Glycine max |
transcript | GLYMA07G07200.1 |
intron # | 7 |
splice site | 3' |
intron type | U2 |
EST: TGATGAGAAATCTCTCCATCAATTTAATGAGTCCTGAATTTGAGGATCAC AAGAGGATGCTTTCATCATATGACACCGACTCTGACAAGTCGAAGTTGGTTEST: gi|208297363|gb|GE090534.1|GE090534
genomic: TGATGAGAAATCTCTCCATCAATTTAATGAGTCCTGAATTTGAGGATCATgtaagtttgt ... tttaatgcagAAGAGGATGCTTTCATCATATGACACCGACTCTGACAAGTCGAAGTTGGTT
EST: TGATGAGAAATCTCTCCATCAATTTAATGAGTCCTGAATTTGAGGATCAT AAGAGGATGCTTTCATCATATGACACCGACTCTGACAAGTCGAAGTTGGTT
genomic: TGATGAGAAATCTCTCCATCAATTTAATGAGTCCTGAATTTGAGGATCATgtaagtttgt ... tttaatgcagAAGAGGATGCTTTCATCATATGACACCGACTCTGACAAGTCGAAGTTGGTT
tgtacttcatcatggtctactgactgattcttttcctgccaaacctttaatgcagAAGAGGATGCTTTCATCATATGACACCGACTCTGACAAGTCGAAGTTGGTTAATATTTGCAGCAAATCCCTCACTAATAAATCTGAGAGTGCTGTTTTGT
ccttt CT-rich tract
attctttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tatgttccatactgtcactgctagtgttgtcttattattcataactgtacttcatcatggtctactgactgattcttttcctgccaaacctttaatgcagAAGAGGATGCTTTCATCATATGACACCGACTCTGACAAGTCGAAGTTGGTTAATATTTGCAGCAAATCCCTCACTAATAAATCTGAGAGTGCTGTTTTGT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGTT
- - - ccatact
- - - - - - - -cactgct
- - - - - - - - - - - - tgttgtc
- - - - - - - - - - - - - - - - - - - - - -actgtac
- - - - - - - - - - - - - - - - - - - - - - - - - - - -catggtc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tactgac