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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtcagaaagttttagttatgaagttcttttatttatacactttactatgttttgttttttactgttttatttaccctttgacttttgcatgaggaattgatatctgtgaataacagtaaatgtggattattattgctttatagctttatactaatgttttcaattttttgaatgcagCATATTAACAGGGCTTCTTTCATTCATG

Basic information

species Glycine max
transcript GLYMA07G05170.1
intron # 7
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|8669207|gb|BE190314.1|BE190314
EST:     TTCATCCAGAAAGTTGGAATCCCATGTGGTCTGTATCAAG                         CATATTAACAGGGCTTCTTTCATTCATG
genomic: TTCATCCAGAAAGTTGGAATCCCATGTGGTCTGTATCAAGgtcagaaagt ... ttgaatgcagCATATTAACAGGGCTTCTTTCATTCATG
EST: gi|193367615|gb|FK332077.1|FK332077
EST:     TTCATCCAGAAAGTTGGAATCCCATGTGGTCTGTATAAAG                         CATATTAACAGGGCTTCTTTCATTCATG
genomic: TTCATCCAGAAAGTTGGAATCCCATGTGGTCTGTATCAAGgtcagaaagt ... ttgaatgcagCATATTAACAGGGCTTCTTTCATTCATG
EST: gi|208189947|gb|GD990021.1|GD990021
EST:     TTCATCCAGAAAGTTGGAATCCCATGTGGTCTGTATCAAG                         CATATTAACAGGGCTTCTTTC
genomic: TTCATCCAGAAAGTTGGAATCCCATGTGGTCTGTATCAAGgtcagaaagt ... ttgaatgcagCATATTAACAGGGCTTCTTTC
EST: gi|193362954|gb|FK327934.1|FK327934
EST:     TTCATCCAGAAAGTTGGAATCCCATGTGGTCTGTATAAAG                         CATAATTAACAGG-CTTCTTTCATTCATG
genomic: TTCATCCAGAAAGTTGGAATCCCATGTGGTCTGTATCAAGgtcagaaagt ... ttgaatgcagCATA-TTAACAGGGCTTCTTTCATTCATG
EST: gi|120495095|gb|EH223262.1|EH223262
EST:     TTCATCCAGAAAGTTGGAATCCCATGTGGTCTGTATCAAG                         CATATTAACAGGGCTTCTTTCATTCATG
genomic: TTCATCCAGAAAGTTGGAATCCCATGTGGTCTGTATCAAGgtcagaaagt ... ttgaatgcagCATATTAACAGGGCTTCTTTCATTCATG
EST: gi|208045851|gb|GD847707.1|GD847707
EST:     TTCATCCAGAAAGTTGGAATCCCATGTGGTCTGTATCAAG                         CATATTAACAGGGCTTCTTTCATTCATG
genomic: TTCATCCAGAAAGTTGGAATCCCATGTGGTCTGTATCAAGgtcagaaagt ... ttgaatgcagCATATTAACAGGGCTTCTTTCATTCATG
EST: gi|208275347|gb|GE075615.1|GE075615
EST:     TTCATCCAGAAAGTTGGAATCCCATGTGGTCTGTATCAAG                         CATATTAACAGGGCTTCTTTCATTCATG
genomic: TTCATCCAGAAAGTTGGAATCCCATGTGGTCTGTATCAAGgtcagaaagt ... ttgaatgcagCATATTAACAGGGCTTCTTTCATTCATG
EST: gi|9902562|gb|BE611593.1|BE611593
EST:     TTCATCCAGAAAGTTGGAATCCCATGTGGTCTGTATCAAG                         CATATTAACAGGGCTTCTTTCATTCATG
genomic: TTCATCCAGAAAGTTGGAATCCCATGTGGTCTGTATCAAGgtcagaaagt ... ttgaatgcagCATATTAACAGGGCTTCTTTCATTCATG
EST: gi|7692130|gb|AW760244.1|AW760244
EST:     TTCATCCAGAAAGTTGGAATCCCATGTGGTCTGTATCAAG                         CATATTAACAGGGCTTCTTTCATTCATG
genomic: TTCATCCAGAAAGTTGGAATCCCATGTGGTCTGTATCAAGgtcagaaagt ... ttgaatgcagCATATTAACAGGGCTTCTTTCATTCATG
EST: gi|120491908|gb|EH220075.1|EH220075
EST:     TTCATCCAGAAAGTTGGAATCCCATGTGGTCTGTATCAAG                         CATATTAACAGGGCTTCTTTCATTCATG
genomic: TTCATCCAGAAAGTTGGAATCCCATGTGGTCTGTATCAAGgtcagaaagt ... ttgaatgcagCATATTAACAGGGCTTCTTTCATTCATG
EST: gi|192331929|gb|FK026713.1|FK026713
EST:     TTCATCCAGAAAGTTGGAATCCCATGTGGTCTGTATCAAG                         CATATTAACAGGGCTTCTTTCATTCATG
genomic: TTCATCCAGAAAGTTGGAATCCCATGTGGTCTGTATCAAGgtcagaaagt ... ttgaatgcagCATATTAACAGGGCTTCTTTCATTCATG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tggattattattgctttatagctttatactaatgttttcaattttttgaatgcagCATATTAACAGGGCTTCTTTCATTCATG
                          tactaat  putative branch site (score: 1)
                                         tttttt  putative PPT
                      tttatactaatgtttt  TA-rich tract