Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   		13  
 5'  3'   		14  
 5'  3'   		15  
 5'  3'   		16  
 5'  3'   		17  
 5'  3'   		18  
 5'  3'   		19  
 5'  3'   		20  
 5'  3'   
21  
 5'  3'   		22  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgtgtaatagctgcttatttattttttttgtaattatttgtttgttatatatttttaattctaaatacttttgtttgttgttgatgtggctaacctttcccttttatagACACCACTTGAAAATTTAGAACCTGTTTTGCGAGAAGATATTCAGAAG

Basic information

species Glycine max
transcript GLYMA07G01230.1
intron # 7
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA07G01230.1 (Glycine max), 3'ss of exon 7
lower sequence: Vv09s0002g02200.t01 (Vitis vinifera), 3'ss of exon 7
--------------gtgtgtaatagctgcttatttattttttttg-taattatttgttt-gttatatatttttaattctaa-----atacttttgtttgttg---ttgatgtggctaacctttcccttttatagACACCACTTGAAAATTTAGAACCTGTTTTGCGAGAAGATATTCAGAAG
               ||||   ||  || |  | || |      | ||  || |  ||| ||| ||| ||| |   | |||     ||| |   ||  | ||   || | ||| || |  |||    | || |||||||||| |||||||||||||||||| |  | |||||||| ||||||
gtgtgttttctctcttgtgccttatttgatgttatagtgcgagggatagctagtattttagttgtatgtttgtttgtttaagtgagatattaaggtgagctgaactttaagtg-ctgattttttttgtatacagACACCACTGGAAAATTTAGAACCTGTTCTAAGGGAAGATATCCAGAAG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|209704689|gb|BW656667.1|BW656667
EST:     TTAGTCCACGAAAAACAACATTGTTGTTTGTCATACGCGATAAAACAAGG                         ACACCACTTGAAAATTTAGAACCTGTTTTGCGAGAAGATATTCAGAAG
genomic: TTAGTCCACGAAAAACAACATTGTTGTTTGTCATACGCGATAAAACAAGGgtgtgtaata ... ccttttatagACACCACTTGAAAATTTAGAACCTGTTTTGCGAGAAGATATTCAGAAG






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttaattctaaatacttttgtttgttgttgatgtggctaacctttcccttttatagACACCACTTGAAAATTTAGAACCTGTTTTGCGAGAAGATATTCAGAAG
                                 ggctaac  putative branch site (score: 2)
                                   ctaacctttccctttt  CT-rich tract
       taaatacttttgttt  TA-rich tract