1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
...gatccactagtctgccctactacgtgtggttaatttgcaatgcttttgtgttagttttcctttgcttgctcgtgctgagtttgcttattttgttttgtagCTCATAGCAAACAAGATCAAACGTTGCAAAACTGATTCATTTCCTGG
species | Glycine max |
transcript | GLYMA06G09240.2 |
intron # | 7 |
splice site | 3' |
intron type | U2 |
EST: AGTCTGCACCTTCTGATCAATCCAGAATCAATATTCTTGATCCTAAAGAT CTCATAGCAAACAAGATCAAACGTTGCAAAACTGATTCATTTCCTGGEST: gi|15203981|gb|BI426758.1|BI426758
genomic: AGTCTGCACCTTCTGATCAATCCAGAATCAATATTCTTGATCCTAAAGATgtaagtaaaa ... tgttttgtagCTCATAGCAAACAAGATCAAACGTTGCAAAACTGATTCATTTCCTGG
EST: AGTCTGCACCTTCTGATCAATCCAGAATCAATATTCTTGATCCTAAAGAT CTCATAGCAAACAAGATCAAACGTTGCAAAACTGATTCATTTCCTGGEST: gi|15662082|gb|BI699453.1|BI699453
genomic: AGTCTGCACCTTCTGATCAATCCAGAATCAATATTCTTGATCCTAAAGATgtaagtaaaa ... tgttttgtagCTCATAGCAAACAAGATCAAACGTTGCAAAACTGATTCATTTCCTGG
EST: AGTCTGCACCTTCTGATCAATCCAGAATCAATATTCTTGATCCTAAAGAT CTCATAGCAAACAAGATCAAACGTTGCAAAACTGATTCATTTCCTGG
genomic: AGTCTGCACCTTCTGATCAATCCAGAATCAATATTCTTGATCCTAAAGATgtaagtaaaa ... tgttttgtagCTCATAGCAAACAAGATCAAACGTTGCAAAACTGATTCATTTCCTGG
ttgtgttagttttcctttgcttgctcgtgctgagtttgcttattttgttttgtagCTCATAGCAAACAAGATCAAACGTTGCAAAACTGATTCATTTCCTGG
ttttgtttt CT-rich tract
ttattttgttttgta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gatccactagtctgccctactacgtgtggttaatttgcaatgcttttgtgttagttttcctttgcttgctcgtgctgagtttgcttattttgttttgtagCTCATAGCAAACAAGATCAAACGTTGCAAAACTGATTCATTTCCTGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGATCA