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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtttgtgtcattgatttgttttcattaattattgttactacaatactatattgtataaattttccacgaaacaatgtaaatgttttcttgattatatgccacccatgtgttatctaaaacaatctaaactttttcagCCATTATTCCCTGGCGAAAATGCAGTAGACCAGCTTGTACATATTATAAAG

Basic information

species Glycine max
transcript GLYMA06G06850.1
intron # 7
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|10236817|gb|BE805705.1|BE805705
EST:     TTGATATTTGGTCAGCTGGCTGTGTTCTTGCTGAACTTCTTTTGGGCCAG                         CCATTATTCCCTGGCGAAAATGCAGTAGACCAGCTTGTACATATTATAAAG
genomic: TTGATATTTGGTCAGCTGGCTGTGTTCTTGCTGAACTTCTTTTGGGCCAGgtttgtgtca ... actttttcagCCATTATTCCCTGGCGAAAATGCAGTAGACCAGCTTGTACATATTATAAAG
EST: gi|6482526|gb|AW201783.1|AW201783
EST:     TTGATATTTGGTCAGCTGGCTGTGTTCTTGCTGAACTTCTTTTGGGCCAG                         CCATTATTCCCTGGCGAAAATGCAGTAGACCAGCTTGTACATATTATAAAG
genomic: TTGATATTTGGTCAGCTGGCTGTGTTCTTGCTGAACTTCTTTTGGGCCAGgtttgtgtca ... actttttcagCCATTATTCCCTGGCGAAAATGCAGTAGACCAGCTTGTACATATTATAAAG
EST: gi|15815079|gb|BI787354.1|BI787354
EST:     TTGATATTTGGTCAGCTGGCTGTGTTCTTGCTGAACTTCTTTTGGGCCAG                         CCATTATTCCCTGGCGAAAATGCAGTAGACCAGCTTGTACATATTATAAAG
genomic: TTGATATTTGGTCAGCTGGCTGTGTTCTTGCTGAACTTCTTTTGGGCCAGgtttgtgtca ... actttttcagCCATTATTCCCTGGCGAAAATGCAGTAGACCAGCTTGTACATATTATAAAG
EST: gi|12773946|gb|BG238873.1|BG238873
EST:     TTGATATTTGGTCAGCTGGCTGTGTTCTTGCTGAACTTCTTTTGGGCCAG                         CCATTATTCCCTG
genomic: TTGATATTTGGTCAGCTGGCTGTGTTCTTGCTGAACTTCTTTTGGGCCAGgtttgtgtca ... actttttcagCCATTATTCCCTG
EST: gi|207772416|gb|GD742672.1|GD742672
EST:     TTGGTATTTGGTCAGCTGGCTGTGTTCTTGCTGAACTTCTTTTGGGCCAG                         CCATTATTCCCTGGCGAAAATGCAGTAGACCAGCTTGTACATATTATAAAG
genomic: TTGATATTTGGTCAGCTGGCTGTGTTCTTGCTGAACTTCTTTTGGGCCAGgtttgtgtca ... actttttcagCCATTATTCCCTGGCGAAAATGCAGTAGACCAGCTTGTACATATTATAAAG
EST: gi|7590646|gb|AW706394.1|AW706394
EST:     TTGATATTTGGTCAGCTGGCTGTGTTCTTGCTGAACTTCTTTTGGGCCAG                         CCATTATTCCCTGGCGAAAATGCAGTAGACCAGCTTGTACATATTATAAAG
genomic: TTGATATTTGGTCAGCTGGCTGTGTTCTTGCTGAACTTCTTTTGGGCCAGgtttgtgtca ... actttttcagCCATTATTCCCTGGCGAAAATGCAGTAGACCAGCTTGTACATATTATAAAG
EST: gi|14990804|gb|BI316477.1|BI316477
EST:     TTGATATTTGGTCAGCTGGCTGTGTTCTTGCTGAACTTCTTTTGGGCCAG                         CCATTATTCCCTGGCGAAAATGCAGTAGACCAGCTTGTACATATTATAAAG
genomic: TTGATATTTGGTCAGCTGGCTGTGTTCTTGCTGAACTTCTTTTGGGCCAGgtttgtgtca ... actttttcagCCATTATTCCCTGGCGAAAATGCAGTAGACCAGCTTGTACATATTATAAAG
EST: gi|6455159|gb|AW185842.1|AW185842
EST:     TTGATATTTGGTCAGCTGGCTGTGTTCTTGCTGAACTTCTTTTGGGCCAG                         CCATTATTCCCTGGCGAAAATGCAGTAGACCAGCTTGTACATATTATAAAG
genomic: TTGATATTTGGTCAGCTGGCTGTGTTCTTGCTGAACTTCTTTTGGGCCAGgtttgtgtca ... actttttcagCCATTATTCCCTGGCGAAAATGCAGTAGACCAGCTTGTACATATTATAAAG
EST: gi|105634210|gb|DW247405.1|DW247405
EST:     TTGATATTTGGTCAGCTGGCTGTGTTCTTGCTGAACTTCTTTTGGGCCAG                         CCATTATTCCCTGGCGAAAATGCAGTAGACCAGCTTGT
genomic: TTGATATTTGGTCAGCTGGCTGTGTTCTTGCTGAACTTCTTTTGGGCCAGgtttgtgtca ... actttttcagCCATTATTCCCTGGCGAAAATGCAGTAGACCAGCTTGT
EST: gi|207797921|gb|GD768499.1|GD768499
EST:     TTGATATTTGGTCAGCTGGCTGTGTTCTTGCTGAACTTCTTTTGGGCCAG                         CCATTATTCCCTGGCGAAAATGCAGTAGACCAGCTTGTACATATTATAAAG
genomic: TTGATATTTGGTCAGCTGGCTGTGTTCTTGCTGAACTTCTTTTGGGCCAGgtttgtgtca ... actttttcagCCATTATTCCCTGGCGAAAATGCAGTAGACCAGCTTGTACATATTATAAAG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttttcttgattatatgccacccatgtgttatctaaaacaatctaaactttttcagCCATTATTCCCTGGCGAAAATGCAGTAGACCAGCTTGTACATATTATAAAG
                                       atctaaa  putative branch site (score: 3)
                                              ctttttc  CT-rich tract
                           ttatctaaaacaat  TA-rich tract