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...ttaagtgttatttatgcacttgtatcatgtgtatgtatctttagtaattagtatcctctcatttccttatccattttttttgtatttctttctatgatagACTATTCTTGATGCTGCAACGCTTTCCTGTGGAATCCAAAGGTCGACGCAAGAAGCTACAAGAG
species | Glycine max |
transcript | GLYMA05G26630.1 |
intron # | 7 |
splice site | 3' |
intron type | U2 |
EST: GGGTTTCTTTGTTTGCAGCCCTTGGCTTTCTTCTCTACGGTGGAAG ACTATTCTTGATGCTGCAACGCTTTCCTGTGGAATCCAAAGGTCGACGCAAEST: gi|193718027|gb|FK653803.1|FK653803
genomic: GGGTTTCTTTGTTTGCAGCCCTTGGCTTTCTTCTCTACGGTGGAAGgtgattgtct ... tctatgatagACTATTCTTGATGCTGCAACGCTTTCCTGTGGAATCCAAAGGTCGACGCAA
EST: GGGTTTCTTTGTTTGCAGCCCTTGGCTTTCTTCTCTACGGTGGAAG ACTATTCTTGATGCTGCAACGCTTTCCTGTGGAATCCAAAGGTCGACGCAAEST: gi|151402287|gb|EV272100.1|EV272100
genomic: GGGTTTCTTTGTTTGCAGCCCTTGGCTTTCTTCTCTACGGTGGAAGgtgattgtct ... tctatgatagACTATTCTTGATGCTGCAACGCTTTCCTGTGGAATCCAAAGGTCGACGCAA
EST: GGGTCTCTTTGTTTGCAGCCCTTGGCTTTCTTCTCTACGGTGGAAG ACTATTCTTGATGCTGCAACGCTTTCCTGTGGAATCCAAAGGTCGACGCAAEST: gi|151407580|gb|EV277395.1|EV277395
genomic: GGGTTTCTTTGTTTGCAGCCCTTGGCTTTCTTCTCTACGGTGGAAGgtgattgtct ... tctatgatagACTATTCTTGATGCTGCAACGCTTTCCTGTGGAATCCAAAGGTCGACGCAA
EST: GGGTTTCTTTGTTTGCAGCCCTTGGCTTTCTTCTCTACGGTGGAAG ACTATTCTTGATGCTGCAACGCTTTCCTGTGGAATCCAAAGGTCGACGCAAEST: gi|254327807|gb|GR834772.1|GR834772
genomic: GGGTTTCTTTGTTTGCAGCCCTTGGCTTTCTTCTCTACGGTGGAAGgtgattgtct ... tctatgatagACTATTCTTGATGCTGCAACGCTTTCCTGTGGAATCCAAAGGTCGACGCAA
EST: GGGTTTCTTTGTTTGCAGCCCTTGGCTTTCTTCTCTACGGTGGAAG ACTATTCTTGATGC
genomic: GGGTTTCTTTGTTTGCAGCCCTTGGCTTTCTTCTCTACGGTGGAAGgtgattgtct ... tctatgatagACTATTCTTGATGC
aattagtatcctctcatttccttatccattttttttgtatttctttctatgatagACTATTCTTGATGCTGCAACGCTTTCCTGTGGAATCCAAAGGTCGACGCAAGAAGCTACAAGAG
tcctctcatttcctta CT-rich tract
attttttttgtatttc TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ttaagtgttatttatgcacttgtatcatgtgtatgtatctttagtaattagtatcctctcatttccttatccattttttttgtatttctttctatgatagACTATTCTTGATGCTGCAACGCTTTCCTGTGGAATCCAAAGGTCGACGCAAGAAGCTACAAGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC
- - - - - - tatgcac
- - - - - - - - - - - - - - -tgtatgt