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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtttgtgtcattgatgtgttttcattaattattgttactacaattctattatataaattttccacaaaatgatgtaaatgttctgttgattatctggcacccatgtgttatctaaaacaaattgaacttttgcagCCATTATTCCCTGGCGAAAATGCAGTAGACCAGCTTGTACATATTATAAAG

Basic information

species Glycine max
transcript GLYMA04G06760.1
intron # 7
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|26048883|gb|CA785336.1|CA785336
EST:     TTGATATTTGGTCAGCTGGCTGTGTCCTTGCTGAACTTCTTTTGGGCCAG                         CCATTATTCCCTGGCGAAAATGCAGTAGACCAGCTTGTACATATTATAAAG
genomic: TTGATATTTGGTCAGCTGGCTGTGTCCTTGCTGAACTTCTTTTGGGCCAGgtttgtgtca ... acttttgcagCCATTATTCCCTGGCGAAAATGCAGTAGACCAGCTTGTACATATTATAAAG
EST: gi|13252463|gb|BG363374.1|BG363374
EST:     TTGATATTTGGTCAGCTGGCTGTGTCCTTGCTGAACTTCTTTTGGGCCAG                         CCATTATTCCCTGGCGAAAATGCAGTAGACCAGCTTGTACATATTATAAAG
genomic: TTGATATTTGGTCAGCTGGCTGTGTCCTTGCTGAACTTCTTTTGGGCCAGgtttgtgtca ... acttttgcagCCATTATTCCCTGGCGAAAATGCAGTAGACCAGCTTGTACATATTATAAAG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttctgttgattatctggcacccatgtgttatctaaaacaaattgaacttttgcagCCATTATTCCCTGGCGAAAATGCAGTAGACCAGCTTGTACATATTATAAAG
                             atctaaa  putative branch site (score: 3)
                                              cttttgc  putative PPT
                           ttatctaaaacaaatt  TA-rich tract