1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
...tgttattgagcttaaccattccactgatgtttatgagcttgccttactgtgttattgatttcctggtaataattttattatgttatatttttggcttcagTGAAACACTCTTGATTTTCTTCTTACCTCAAGTTTTGAACTTCCTCTTGTCACTCCCCCAG
species | Glycine max |
transcript | GLYMA02G34640.1 |
intron # | 7 |
splice site | 3' |
intron type | U2 |
EST: TACTTTGCTGGGATGACTATGGCTGTGATTGGTATTTTAGGCCATTTTAG TGAAACACTCTTGATTTTCTTCTTACCTCAAGTTTTGAACTTCCTCTTGTCEST: gi|192305577|gb|FG998333.1|FG998333
genomic: TACTTTGCTGGGATGACTATGGCTGTGATTGGTATTTTAGGCCATTTTAGgtacatcctt ... ttggcttcagTGAAACACTCTTGATTTTCTTCTTACCTCAAGTTTTGAACTTCCTCTTGTC
EST: TACTTTGCTGGGATGACTATGGCTGTGATTGGTATTTTAGGCCATTTTAG TGAAACACTCTTGATTTTCTTCTTACCTCAAGTTTTGAACTTCCTCTTGTCEST: gi|57575186|gb|CX548161.1|CX548161
genomic: TACTTTGCTGGGATGACTATGGCTGTGATTGGTATTTTAGGCCATTTTAGgtacatcctt ... ttggcttcagTGAAACACTCTTGATTTTCTTCTTACCTCAAGTTTTGAACTTCCTCTTGTC
EST: TACTTTGCTGGGATGACTATGGCTGTGATTGGTATTTTAGGCCATTTTAG TGAAACACTCTTGATTTTCTTCTTACCTCAAGTTTTGAACTTCCTCTTGTCEST: gi|254338362|gb|GR845612.1|GR845612
genomic: TACTTTGCTGGGATGACTATGGCTGTGATTGGTATTTTAGGCCATTTTAGgtacatcctt ... ttggcttcagTGAAACACTCTTGATTTTCTTCTTACCTCAAGTTTTGAACTTCCTCTTGTC
EST: TACTTTGCTGGGATGACTATGGCTGTGATTGGTATTTTAGGCCATTTTAG TGAAACACTCTTGATTTTCTTCTTACCTCAAGTTTTGAACTTCCTCTTGTC
genomic: TACTTTGCTGGGATGACTATGGCTGTGATTGGTATTTTAGGCCATTTTAGgtacatcctt ... ttggcttcagTGAAACACTCTTGATTTTCTTCTTACCTCAAGTTTTGAACTTCCTCTTGTC
actgtgttattgatttcctggtaataattttattatgttatatttttggcttcagTGAAACACTCTTGATTTTCTTCTTACCTCAAGTTTTGAACTTCCTCTTGTCACTCCCCCAG
tattgat putative branch site (score: 3)
tattttt putative PPT
atttcctggtaataat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tgttattgagcttaaccattccactgatgtttatgagcttgccttactgtgttattgatttcctggtaataattttattatgttatatttttggcttcagTGAAACACTCTTGATTTTCTTCTTACCTCAAGTTTTGAACTTCCTCTTGTCACTCCCCCAG
- - - - - - - -ccattcc
- - - - - - - - - - - actgatg
- - - - - - - - - - - - - - - - - - gcttgcc
- - - - - - - - - - - - - - - - - - - - - - tactgtg