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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtttgagttctttaaaccctatgtcagttggggttttaggcttttagcttatttaacatgacacatttagttggcttcatgttagagaaactttttgcttgatttggcaaggtggttgtagtattggcttctaattcagttctttcttggttatatagCTGGGGGAAGAATTGTATTTCACTGTTGGCTCTCAACACATTCCTTTTGGTGCATCTCCACAG

Basic information

species Glycine max
transcript GLYMA01G37380.1
intron # 7
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|15661878|gb|BI699249.1|BI699249
EST:     CTCCTCCATTACCTGCTGGCAGCATTTACATGGAAGAGGTCCATGTGAAG                         CTGGGGGAAGAATTGTATTTCACTGTTGGCTCTCAACACATTCCTTTTGGT
genomic: CTCCTCCATTACCTGCTGGCAGCATTTACATGGAAGAGGTCCATGTGAAGgtttgagttc ... ggttatatagCTGGGGGAAGAATTGTATTTCACTGTTGGCTCTCAACACATTCCTTTTGGT






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttggcaaggtggttgtagtattggcttctaattcagttctttcttggttatatagCTGGGGGAAGAATTGTATTTCACTGTTGGCTCTCAACACATTCCTTTTGGTGCATCTCCACAG
                         ttctaat  putative branch site (score: 2)
                                    ttctttcttg  putative PPT
                                               ttatata  TA-rich tract