1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
...atagcttctttttttttaaaaaaaaataaggttgcttaaagttaaattctgtgtatgaatattgtccaatgtatttatttacttgttttggtatgtacagGGCGAGGTAGAGGCTGATTCTAAAAAGTGGCAGGAACTACTCAATGTGTATCGGTAGCAACTTCACTGCCCGTGTTTCCTGTGCATCCTTGGCTTTTAAC
species | Glycine max |
transcript | GLYMA19G39780.1 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: AGGAGGCCGAGGCAGGGGTGGTCCCAGTGGAAAGCCTGGTGGAAACAGGG GGCGAGGTAGAGGCTGATTCTAAAAAGTGGCAGGAACTACTCAATGTGTATEST: gi|15286667|gb|BI470558.1|BI470558
genomic: AGGAGGCCGAGGCAGGGGTGGTCCCAGTGGAAAGCCTGGTGGAAACAGAGgtaaatcata ... gtatgtacagGGCGAGGTAGAGGCTGATTCTAAAAAGTGGCAGGAACTACTCAATGTGTAT
EST: AGGAGGCCGAGGCAGGGGTGGTCCCAGTGGAAAGCCTGGTGGAAACAGAG GGCGAGGTAGAGGCTGATTCTAAAAAGTGGCAGGAACTACTCAATEST: gi|9259879|gb|BE348026.1|BE348026
genomic: AGGAGGCCGAGGCAGGGGTGGTCCCAGTGGAAAGCCTGGTGGAAACAGAGgtaaatcata ... gtatgtacagGGCGAGGTAGAGGCTGATTCTAAAAAGTGGCAGGAACTACTCAAT
EST: AGGAGGCCGANGCAGGGGTGGTCCCAGTGGAAAGCCTGTTGGAAACAGAG GGCGAGGTAAANGCTGATTCTAAAAAGTGGCAAGAACTACTCAATGTGTAT
genomic: AGGAGGCCGAGGCAGGGGTGGTCCCAGTGGAAAGCCTGGTGGAAACAGAGgtaaatcata ... gtatgtacagGGCGAGGTAGAGGCTGATTCTAAAAAGTGGCAGGAACTACTCAATGTGTAT
attctgtgtatgaatattgtccaatgtatttatttacttgttttggtatgtacagGGCGAGGTAGAGGCTGATTCTAAAAAGTGGCAGGAACTACTCAATGTGTATCGGTAGCAACTTCACTGCCCGTGTTTCCTGTGCATCCTTGGCTTTTAAC
aatgtatttatttact TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| atagcttctttttttttaaaaaaaaataaggttgcttaaagttaaattctgtgtatgaatattgtccaatgtatttatttacttgttttggtatgtacagGGCGAGGTAGAGGCTGATTCTAAAAAGTGGCAGGAACTACTCAATGTGTATCGGTAGCAACTTCACTGCCCGTGTTTCCTGTGCATCCTTGGCTTTTAAC
- -gcttctt
- - - - - - - - -aaaaaaa
- - - - - - - - - - - - - - aggttgc
- - - - - - - - - - - - - - - - - - - - - - - - - -tgtatga
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ccaatgt