1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
...ctgaataatatgaattcattctcaattatgtcaacttggtttatccaatcgatataatttgtaattcttgtctgattaaatgacacatcttgtcttgcagTACGTAGATCGACCTGGTGTTAGCTTTTGTTCTAGAACTACTTATGATGACAATGCAATAACAAATGCTGTTGAGATTTATGATCATCCAAG
species | Glycine max |
transcript | GLYMA17G00740.3 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: GGGATAAGTTGTTGATTGCCGGGGGTTTTCAAGGAGAACTTATTTGCAAG TATGTAGATCGACCTGGTGTTAGCTTTTGTTCTAGAACTACTTATGATGACEST: gi|58018610|gb|CX705352.1|CX705352
genomic: GGGATAAGTTGTTGATTGCTGGGGGGTTTCAAGGAGAACTTATTTGCAAGgtacttcaat ... tgtcttgcagTACGTAGATCGACCTGGTGTTAGCTTTTGTTCTAGAACTACTTATGATGAC
EST: GGATAAAGTTGTTGATTGCTGGGGGGTTTCAAGGAGAACTTATTTGCAAG TACGTAGATCGACCTGGTGTTAGCTTTTGTTCTAGAACTACTTATGATGACEST: gi|18735074|gb|BM528549.1|BM528549
genomic: GGAT-AAGTTGTTGATTGCTGGGGGGTTTCAAGGAGAACTTATTTGCAAGgtacttcaat ... tgtcttgcagTACGTAGATCGACCTGGTGTTAGCTTTTGTTCTAGAACTACTTATGATGAC
EST: GGGATAAGTTGTTGATTGCTGGGGGGTTTCAAGGAGAACTTATTTGCAAG TACGTAGATCGACCTGGTGTTAGCTTTTGTTCTAGAACTACTTATGATGACEST: gi|192317031|gb|FK007826.1|FK007826
genomic: GGGATAAGTTGTTGATTGCTGGGGGGTTTCAAGGAGAACTTATTTGCAAGgtacttcaat ... tgtcttgcagTACGTAGATCGACCTGGTGTTAGCTTTTGTTCTAGAACTACTTATGATGAC
EST: GGGATAAGTTGTTGATTGCTGGGGGGTTTCAAGGAGAACTTATTTGCAAG TACGTAGATCGACCTGGTGTTAGCTTT-GTTCTAGAACTACTTATGATGACEST: gi|11412572|gb|BF424583.1|BF424583
genomic: GGGATAAGTTGTTGATTGCTGGGGGGTTTCAAGGAGAACTTATTTGCAAGgtacttcaat ... tgtcttgcagTACGTAGATCGACCTGGTGTTAGCTTTTGTTCTAGAACTACTTATGATGAC
EST: GGGATAAGTTGTTGATTGCTGGGGGGTTTCAAGGAGAACTTATTTGCAAG TACGTAGATCGACCTGGTGTTAGCTTTTGTTCTAGAACTACTTATGATGACEST: gi|193709474|gb|FK644174.1|FK644174
genomic: GGGATAAGTTGTTGATTGCTGGGGGGTTTCAAGGAGAACTTATTTGCAAGgtacttcaat ... tgtcttgcagTACGTAGATCGACCTGGTGTTAGCTTTTGTTCTAGAACTACTTATGATGAC
EST: TTTCAAGGAGAACTTATTTGCAAG TATGTAGATCGACCTGGTGTTAGCTTTTGTTCTAGAACTACTTATGATGACEST: gi|254340112|gb|GR858237.1|GR858237
genomic: TTTCAAGGAGAACTTATTTGCAAGgtacttcaat ... tgtcttgcagTACGTAGATCGACCTGGTGTTAGCTTTTGTTCTAGAACTACTTATGATGAC
EST: GGGATAAGTTGTTGATTGCTGGGGGGTTTCAAGGAGAACTTATTTGCAAG TACGTAGATCGACCTGGTGTTAGCTTTTGTTCTAGAACTACTTATGATGAC
genomic: GGGATAAGTTGTTGATTGCTGGGGGGTTTCAAGGAGAACTTATTTGCAAGgtacttcaat ... tgtcttgcagTACGTAGATCGACCTGGTGTTAGCTTTTGTTCTAGAACTACTTATGATGAC
caatcgatataatttgtaattcttgtctgattaaatgacacatcttgtcttgcagTACGTAGATCGACCTGGTGTTAGCTTTTGTTCTAGAACTACTTATGATGACAATGCAATAACAAATGCTGTTGAGATTTATGATCATCCAAG
gtctgat putative branch site (score: 4)
tcttgtctt putative PPT
atataatttgtaattc TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ctgaataatatgaattcattctcaattatgtcaacttggtttatccaatcgatataatttgtaattcttgtctgattaaatgacacatcttgtcttgcagTACGTAGATCGACCTGGTGTTAGCTTTTGTTCTAGAACTACTTATGATGACAATGCAATAACAAATGCTGTTGAGATTTATGATCATCCAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGTT