1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
...tatggtcaaacctttagtttttattttttccccctttaaaagttctgtgtattttcctttgttaactttgtgttcttttcttttcttgttttcttcaaagACATGCTTGCTTTTGGTGATTTTTGGGATTGTGCTTCTCATCGTGATCATAGTTCTTGCTGCTTAGTCAAAGGTTATCTCAATTACATTATGGAGCAAAT
species | Glycine max |
transcript | GLYMA16G13410.1 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: ATCTCAACTTTACAAAAGCTTCAAAAACCCAAAGATCAAATTCCTCTTTG ACATGCTTGCTTTTGGTGATTTTTGGGATTGTGCTTCTCATCGTGATCATAEST: gi|9565628|gb|BE475137.1|BE475137
genomic: ATCTCAACTTT-CAAAAGCTTCAAAAACCCAAAGATCAAATTCCTCTTTGgtaatatatc ... ttcttcaaagACATGCTTGCTTTTGGTGATTTTTGGGATTGTGCTTCTCATCGTGATCATA
EST: AATCTCAACTTTCAAAAGCTTCAAAAACCCAAAGATCAAATTCCTCTTTG ACATGCTTGCTTTTGGTGATTTTTGGGATTGTGCTTCTCATCGTGATCATAEST: gi|193654173|gb|FK597371.1|FK597371
genomic: AATCTCAACTTTCAAAAGCTTCAAAAACCCAAAGATCAAATTCCTCTTTGgtaatatatc ... ttcttcaaagACATGCTTGCTTTTGGTGATTTTTGGGATTGTGCTTCTCATCGTGATCATA
EST: AATCTCAACTTGCAAAAGCTTCAAAAACCCAAAGATCAAATTCCTCTTTG ACATGCTTGCTTTTGGTGATTTTTGGGATTGTGCTTCTCATCGTGATCATAEST: gi|207838825|gb|GD810473.1|GD810473
genomic: AATCTCAACTTTCAAAAGCTTCAAAAACCCAAAGATCAAATTCCTCTTTGgtaatatatc ... ttcttcaaagACATGCTTGCTTTTGGTGATTTTTGGGATTGTGCTTCTCATCGTGATCATA
EST: AATCTCAACTTTCAAAAGCTTCAAAAACCCAAAGATCAAATTCCTCTTTG ACATGCTTGCTTTTGGTGATTTTTGGGATTGTGCTTCTCGTCGTGATCATAEST: gi|207848026|gb|GD819639.1|GD819639
genomic: AATCTCAACTTTCAAAAGCTTCAAAAACCCAAAGATCAAATTCCTCTTTGgtaatatatc ... ttcttcaaagACATGCTTGCTTTTGGTGATTTTTGGGATTGTGCTTCTCATCGTGATCATA
EST: AATCTCAACTTTCAAAAGCTTCAAAAACCCAAAGATCAAATTCCTCTTTG ACATGCTTGCTTTTGGTGATTTT-GGGATTGTGCTTCTCATCGTEST: gi|254328509|gb|GR835474.1|GR835474
genomic: AATCTCAACTTTCAAAAGCTTCAAAAACCCAAAGATCAAATTCCTCTTTGgtaatatatc ... ttcttcaaagACATGCTTGCTTTTGGTGATTTTTGGGATTGTGCTTCTCATCGT
EST: AATCTCAACTTTCAAAAGCTTCAAAAACCCAAAGATCAAATTCCTCTTTG ACATGCTTGCTTTTGGTGATTTTTGGGATTGTGCTTCTCATCGTGATCATAEST: gi|254328052|gb|GR835017.1|GR835017
genomic: AATCTCAACTTTCAAAAGCTTCAAAAACCCAAAGATCAAATTCCTCTTTGgtaatatatc ... ttcttcaaagACATGCTTGCTTTTGGTGATTTTTGGGATTGTGCTTCTCATCGTGATCATA
EST: AATCTCAACTTTCAAAAGCTTCAAAAACCCAAAGATCAAATTCCTCTTTG ACATGCTTGCTTTTGGTGATTTTTGGGATTGTGCTTCTCATCGTGATCATA
genomic: AATCTCAACTTTCAAAAGCTTCAAAAACCCAAAGATCAAATTCCTCTTTGgtaatatatc ... ttcttcaaagACATGCTTGCTTTTGGTGATTTTTGGGATTGTGCTTCTCATCGTGATCATA
tgtgtattttcctttgttaactttgtgttcttttcttttcttgttttcttcaaagACATGCTTGCTTTTGGTGATTTTTGGGATTGTGCTTCTCATCGTGATCATAGTTCTTGCTGCTTAGTCAAAGGTTATCTCAATTACATTATGGAGCAAAT
tgttaac putative branch site (score: 2)
ttaactttgtgttctt CT-rich tract
ttttctttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tatggtcaaacctttagtttttattttttccccctttaaaagttctgtgtattttcctttgttaactttgtgttcttttcttttcttgttttcttcaaagACATGCTTGCTTTTGGTGATTTTTGGGATTGTGCTTCTCATCGTGATCATAGTTCTTGCTGCTTAGTCAAAGGTTATCTCAATTACATTATGGAGCAAAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCA
- - -tcaaacc
- - - - - - - - - - - - - -ttccccc
- - - - - - - - - - - - - - - - - - - - - ttctgtg