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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgggttgattgcatgcttgtgtgctatttaactttggaatgtgttatgcatgcatgcatgcgaattatagtcactgacttaatcgaattgaaagcttatttaacttgtctgtgatgatatgcagCCACTAGTAACGGGAGAGAAGACACTTCCAGTGCGCCCTGGCATGTTTCTTGAGACTGTCTCCAAG

Basic information

species Glycine max
transcript GLYMA16G09430.1
intron # 6
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA16G09430.1 (Glycine max), 3'ss of exon 6
lower sequence: Vv00s0333g00020.t01 (Vitis vinifera), 3'ss of exon 6
gtgggttgattgcatgcttgtgtgctatttaactttggaatgtgttatgcatgcatgcatgcgaattatagtca--ctgact--taatcgaattgaaagcttatttaac-ttg---tctgtgatgatatgcagCCACTAGTAACGGGAGAGAAGACACTTCCAGTGCGCCCTGGCATGTTTCTTGAGACTGTCTCCAAG
           |   | ||   | |  || |  | | ||   | | |||  ||   | | | | ||| | |||    |||    |||   |||| ||   || |  ||  |||   | | | ||||| ||||| ||   ||||| |||   ||  | ||||| ||||||||||||||||||||||||||||||||||||
-----------gtgagttttactacacttgatatatagatcctttcatgggtgg--gaaagaggattttggtcggtttgatcaataaattaattaaagcattctggaatattgatttttctcatgatttgcagTCAAGTGTAACAGGACGAAAACCTCTTCCTGTGCGCCCTGGCATGTTTCTTGAGACTGTCTCCAAG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|192301426|gb|FG994078.1|FG994078
EST:     ACAATGAGGATGACACTACCAATGGGGAGCCAGCTGAATTTCTTGGAAGG                         CCACTAGTAACGGGAGAGAAGACACTTCCAGTGCGCCCTGGCATGTTTCTT
genomic: ACAATGAGGATGACACTACCAATGGGGAGCCAGCTGAATTTCTTGGAAGGgtgggttgat ... tgatatgcagCCACTAGTAACGGGAGAGAAGACACTTCCAGTGCGCCCTGGCATGTTTCTT
EST: gi|192301425|gb|FG994077.1|FG994077
EST:     ACAATGAGGATGACACTACCAATGGGGAGCCAGCTGAATTTCTTGGAAGG                         CCACTAGTAACGGGAGAGAAGACACTTCCAGTGCGCCCTGGCATGTTTCTT
genomic: ACAATGAGGATGACACTACCAATGGGGAGCCAGCTGAATTTCTTGGAAGGgtgggttgat ... tgatatgcagCCACTAGTAACGGGAGAGAAGACACTTCCAGTGCGCCCTGGCATGTTTCTT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gtcactgacttaatcgaattgaaagcttatttaacttgtctgtgatgatatgcagCCACTAGTAACGGGAGAGAAGACACTTCCAGTGCGCCCTGGCATGTTTCTTGAGACTGTCTCCAAG
                          ttatttaactt  TA-rich tract