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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaatttgaaaatattggatatgaaccataaggttttttatttatgaacatactttgttcttgtaagatctgatgatgatttgattttattatggtagGTGTGAAGCTTTTTCAACATATCCTCGAACATATGACTTGCTTCATCTTGATAGACTCTTCACCCTAGAAAGCCACAG

Basic information

species Glycine max
transcript GLYMA16G08120.1
intron # 6
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA16G08120.1 (Glycine max), 3'ss of exon 6
lower sequence: Vv02s0033g01120.t01 (Vitis vinifera), 3'ss of exon 6
gtaatttg-aaaatatt-ggatatgaaccataaggttttttatttatgaacatactttgttcttgtaagatctgat--gatgatttgattt-tattatggtagGTGTGAAGCTTTTTCAACATATCCTCGAACATATGACTTGCTTCATCTTGATAGACTCTTCACCCTAGAAAGCCACAG
|||||||  |||  ||| | |||   |  | ||| ||||   | |      |  |    ||||||| |  | || |    |  |||| ||  | || | |||||||||||||||| ||||||||||||||||| |||||  | ||||| |||||| | ||||| ||    ||||| |||||
gtaattttcaaagcatttgaatacacatga-aagcttttgggtctgcattaaggcacacttcttgtgaactttgtttcatttgtttgtttcctgttcttgtagGTGTGAAGCTTTCTCAACATATCCTCGAACGTATGATCTCCTTCACCTTGATGGTCTCTTTACAGCCGAAAGTCACAG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|58022280|gb|CX709021.1|CX709021
EST:     ACACTCCCTATGGTTTATGATCGTGGCCTTATTGGAACCTTCCATGACTG                         GTGTGAAGCTTTTTCAACATATCCTCGAACATATGACTTGCTTCATCTTGA
genomic: ACACTCCCTATGGTTTATGATCGTGGCCTTATTGGAACCTTCCATGACTGgtaatttgaa ... attatggtagGTGTGAAGCTTTTTCAACATATCCTCGAACATATGACTTGCTTCATCTTGA
EST: gi|105634892|gb|DW247700.1|DW247700
EST:     ACACTCCCTGTGGTTTATGATCGTGGCCTTATTGGAACCTTCCATGACTG                         GTGTGAAGCTTTTTCAACATATCCTCGAACATATGACTTGCTTCATCTTGA
genomic: ACACTCCCTATGGTTTATGATCGTGGCCTTATTGGAACCTTCCATGACTGgtaatttgaa ... attatggtagGTGTGAAGCTTTTTCAACATATCCTCGAACATATGACTTGCTTCATCTTGA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

atgaacatactttgttcttgtaagatctgatgatgatttgattttattatggtagGTGTGAAGCTTTTTCAACATATCCTCGAACATATGACTTGCTTCATCTTGATAGACTCTTCACCCTAGAAAGCCACAG
                                         ttttatt  CT-rich tract
                             atgatgatttgatttt  TA-rich tract