1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
gtattaaatttgcttctggaggaatatggtttagtaaatcttcttaaaaatgggatttgatagaatctagctcattttctcttaatgtttgttgcagATGGGGAAGGATGTTGTGTCATTCTTAACTTGGGCCGCCGAACCCGAGATGGAAGAGAGAAAACTG
species | Glycine max |
transcript | GLYMA16G06700.2 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: ATGATGGTGCTGTGGAATATGAAGATGGTACTCCTGCTACAGAAGCTCAG ATGGGGAAGGATGTTGTGTCATTCTTAACTTGGGCCGCCGAACCCGAGATGEST: gi|214004891|gb|DB989037.1|DB989037
genomic: ATGATGGTGCTGTGGAATATGAAGATGGTACTCCTGCTACAGAAGCTCAGgtattaaatt ... tttgttgcagATGGGGAAGGATGTTGTGTCATTCTTAACTTGGGCCGCCGAACCCGAGATG
EST: GCTACAGAAGCTCAG ATGGGGAAGGATGTTGTGTCATTCTTAACTTTTG-CGACCGAACCCGAGATEST: gi|254314652|gb|GR829645.1|GR829645
genomic: GCTACAGAAGCTCAGgtattaaatt ... tttgttgcagATGGGGAAGGATGTTGTGTCATTCTTAACTTGGGCCG-CCGAACCCGAGAT
EST: ATGATGGTGCTGTGGAATATGAAGATGGTACTCCTGCTACAGAAGCTCAG ATGGGGAAGGATGTTGTGTCATTCTTAACTTGGGCCGCCGAACCCGAGATGEST: gi|213601038|gb|DB983713.1|DB983713
genomic: ATGATGGTGCTGTGGAATATGAAGATGGTACTCCTGCTACAGAAGCTCAGgtattaaatt ... tttgttgcagATGGGGAAGGATGTTGTGTCATTCTTAACTTGGGCCGCCGAACCCGAGATG
EST: ATGATGGTGCTGTGGAATATGAAGATGGTACTCCTGCTACAGAAGCTCAG ATGGGGAAGGATGTTGTGTCATTCTTAACTTGGGCCGCCGAACCCGAGATG
genomic: ATGATGGTGCTGTGGAATATGAAGATGGTACTCCTGCTACAGAAGCTCAGgtattaaatt ... tttgttgcagATGGGGAAGGATGTTGTGTCATTCTTAACTTGGGCCGCCGAACCCGAGATG
cttaaaaatgggatttgatagaatctagctcattttctcttaatgtttgttgcagATGGGGAAGGATGTTGTGTCATTCTTAACTTGGGCCGCCGAACCCGAGATGGAAGAGAGAAAACTG
tcttaat putative branch site (score: 3)
ttaatgttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtattaaatttgcttctggaggaatatggtttagtaaatcttcttaaaaatgggatttgatagaatctagctcattttctcttaatgtttgttgcagATGGGGAAGGATGTTGTGTCATTCTTAACTTGGGCCGCCGAACCCGAGATGGAAGAGAGAAAACTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGA