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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...catctagtttgactgcattttgcatcatacagtcctactttaaataacgttttaatgtttttattataactaaaacatgttcatttctgttgtgcctcagGATGGAATGCTTGCATTGCTTTAGTCTGTGGTAACTGTGTTGTGTG

Basic information

species Glycine max
transcript GLYMA15G19670.4
intron # 6
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA15G19670.1 (Glycine max), 3'ss of exon 6
lower sequence: GRMZM2G130440_T01 (Zea mays), 3'ss of exon 6
-catctagtttgactgcattttgcatcatacagtcctactttaaataacgttttaatgttttta-ttataactaaaacatgttcatttctgttgtgcctcagGATGGAATGCTTGCATTGCTTTAGTCTGTGGTAACTGTGTTGTGTG
      | ||  | |||  | |   |  | |   | |     | ||||   | |||| ||  ||   || | ||   ||   | || ||   |||     ||| |||||||||||||||||||| |||||||| || ||||| || ||
ttgctcatttctagtgctatgtaattgctgccaacatttaccatataatcatgtaatcttaatagccatgaatacctcaa--taatctcccatgtcatgtagGTTGGAATGCTTGCATTGCTTTGGTCTGTGGAAATTGTGTCGTCTG

upper sequence: GLYMA15G19670.1 (Glycine max), 3'ss of exon 6
lower sequence: EFJ31432 (Selaginella moellendorffii), 3'ss of exon 6
catctagtttgactgcattttgcatcatacagtcctactttaaataacgttttaatgtttttattataactaaaacatgttcatttctgttgtgcctcagGATGGAATGCTTGCATTGCTTTAGTCTGTGGTAACTGTGTTGTGTG
                                   |||  | ||| | |||||    | ||| ||| ||||   |  ||||   | |  ||||  |||||| ||||||||||||||||| || |||||||| ||||| ||||| ||
----------------------------------gtacgatgaatga-gtttt--cttctttgtta-aacttttatttgttg--tgcctttgt-tctcagGTTGGAATGCTTGCATTGCCTTGGTCTGTGGCAACTGCGTTGTATG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|192311334|gb|FK003791.1|FK003791
EST:     AGGAATAGTTGGTGTAATCACTGCTTTCAACTTTCCATGCGCTGTTCTAG                         GATGGAATGCTTGCATTGCTTTAGTCTGTGGTAACTGTGTTGTGTG
genomic: AGGAATAGTTGGTGTAATCACTGCTTTCAACTTTCCATGCGCTGTTCTAGgtatgtattt ... tgtgcctcagGATGGAATGCTTGCATTGCTTTAGTCTGTGGTAACTGTGTTGTGTG
EST: gi|254315873|gb|GR825682.1|GR825682
EST:     AGGAATAGTTGGTGTAATCACTGCTTTCAACTTTCCATGCGCTGTTCTAG                         GATGGAATGCTTGCATTGCTTTAGTCTGTGGTAACTGTGTTGTGTG
genomic: AGGAATAGTTGGTGTAATCACTGCTTTCAACTTTCCATGCGCTGTTCTAGgtatgtattt ... tgtgcctcagGATGGAATGCTTGCATTGCTTTAGTCTGTGGTAACTGTGTTGTGTG
EST: gi|192296158|gb|FG989743.1|FG989743
EST:     AGGAATAGTTGGTGTAATCACTGCTTTCAACTTTCCATGCGCTGTTCTAG                         GATGGAATGCTTGCATTGCTTTAGTCTGTGGTAACTGTG
genomic: AGGAATAGTTGGTGTAATCACTGCTTTCAACTTTCCATGCGCTGTTCTAGgtatgtattt ... tgtgcctcagGATGGAATGCTTGCATTGCTTTAGTCTGTGGTAACTGTG
EST: gi|192311335|gb|FK003792.1|FK003792
EST:     AGGAATAGTTGGTGTAATCACTGCTTTCAACTTTCCATGCGCTGTTCTAG                         GATGGAATGCTTGCATTGCTTTAGTCTGTGGTAACTGTGTTGTGTG
genomic: AGGAATAGTTGGTGTAATCACTGCTTTCAACTTTCCATGCGCTGTTCTAGgtatgtattt ... tgtgcctcagGATGGAATGCTTGCATTGCTTTAGTCTGTGGTAACTGTGTTGTGTG
EST: gi|151412062|gb|EV281874.1|EV281874
EST:     AGGAATAGTTGGTGTAATCACTGCTTTCAACTTTCCATGCGCTGTTCTAG                         GATGGAATGCTTGCATTGCTTTAGTCTGTGGTAACTGTGTTGTGTG
genomic: AGGAATAGTTGGTGTAATCACTGCTTTCAACTTTCCATGCGCTGTTCTAGgtatgtattt ... tgtgcctcagGATGGAATGCTTGCATTGCTTTAGTCTGTGGTAACTGTGTTGTGTG
EST: gi|15813460|gb|BI785735.1|BI785735
EST:     AGGAATAGTTGGTGTAATCACTGCTTTCAACTTTCCATGCGCTGTTCTAG                         GATGGAATGCTTGCATTGCTTTAGTCTGTGGT
genomic: AGGAATAGTTGGTGTAATCACTGCTTTCAACTTTCCATGCGCTGTTCTAGgtatgtattt ... tgtgcctcagGATGGAATGCTTGCATTGCTTTAGTCTGTGGT
EST: gi|27446368|gb|CA953491.1|CA953491
EST:     AGGAATAGTTGGTGTAATCACTGCTTTCAACTTTCCATGCGCTGTTCTAG                         GATGGAATGCTTGCATTGCTTTAGTCTGTGGTAACTGTGTTGTGTG
genomic: AGGAATAGTTGGTGTAATCACTGCTTTCAACTTTCCATGCGCTGTTCTAGgtatgtattt ... tgtgcctcagGATGGAATGCTTGCATTGCTTTAGTCTGTGGTAACTGTGTTGTGTG
EST: gi|254317668|gb|GR826652.1|GR826652
EST:     AGGAATAGTTGGTGTAATCACTGCTTTCAACTTTCCATGCGCTGTTCTAG                         GATGGAATGCTTGCATTGCTTTAGTCTGTGGTAACTGTGTTGTGTG
genomic: AGGAATAGTTGGTGTAATCACTGCTTTCAACTTTCCATGCGCTGTTCTAGgtatgtattt ... tgtgcctcagGATGGAATGCTTGCATTGCTTTAGTCTGTGGTAACTGTGTTGTGTG
EST: gi|209718196|gb|BW657828.1|BW657828
EST:     AGGAATAGTTGGTGTAATCACTGCTTTCAACTTTCCATGCGCTGTTCTAG                         GATGGAATGCTTGCATTGCTTTAGTCTGTGGTAACTGTGTTGTGTG
genomic: AGGAATAGTTGGTGTAATCACTGCTTTCAACTTTCCATGCGCTGTTCTAGgtatgtattt ... tgtgcctcagGATGGAATGCTTGCATTGCTTTAGTCTGTGGTAACTGTGTTGTGTG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

aacgttttaatgtttttattataactaaaacatgttcatttctgttgtgcctcagGATGGAATGCTTGCATTGCTTTAGTCTGTGGTAACTGTGTTGTGTG
                      aactaaa  putative branch site (score: 2)
                                      tttctgtt  putative PPT
     tttaatgtttttatta  TA-rich tract