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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gttggcatgttctgtttgtctatatcataggttcctggctgtatatttctcttaggactctcttgaatgggatgagggtggggggtggatgtgccaagtgtgagaagttgtgaatgtctaattttaattttgattgtctttgtagACTATCACACCTTTTCGTGGACACTTGGATTTCTCATTTGCATCTGCATGGCATCCTGATGGCCACATATTTGCTACTGGGAACCAAGACAAAACATGTC

Basic information

species Glycine max
transcript GLYMA15G12970.1
intron # 6
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA15G12970.1 (Glycine max), 3'ss of exon 6
lower sequence: Vv00s1206g00020.t01 (Vitis vinifera), 3'ss of exon 5
gttggcatgttctgtttgtctatatcataggttcctggctgtatatttctcttaggactctcttgaatgggatgagggtggggggtggatgtgccaagtgtgagaagttgtgaatgtctaattttaattttgattgtctttgtagACTATCACACCTTTTCGTGGACACTTGGATTTCTCATTTGCATCTGCATGGCATCCTGATGGCCACATATTTGCTACTGGGAACCAAGACAAAACATGTC
                                        |||  | | || ||       | | ||     |    || |||||          ||   | ||||   ||      || |||| || |||  ||     ||||||| ||||  |||||  ||||||||||||||||||||||||||||||||||||||||||||||| | |||||||| ||||||||||| ||||| || || |
----------------------------------------gtacctgtttcctaa------cataaaacttctcccagtaggggg----------aaaaataagaaacggtt--ccactcatttgaagttt--tttatcatgtagACCATCAGGCCTTTGTGTGGACACTTGGATTTCTCATTTGCATCTGCATGGCATCCTGATGGCAATATATTTGCCACTGGGAACCAGGACAAGACTTGCC


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gtgccaagtgtgagaagttgtgaatgtctaattttaattttgattgtctttgtagACTATCACACCTTTTCGTGGACACTTGGATTTCTCATTTGCATCTGCATGGCATCCTGATGGCCACATATTTGCTACTGGGAACCAAGACAAAACATGTC
                                           ttgtcttt  CT-rich tract
                      aatgtctaattttaat  TA-rich tract