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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...ctctattatgtttcaattcagatgtgactaaacagatttgatttatcatgtttatatattgtcgcgtttcaacctcggtgagtatttacctctttcacagGTTCGTGTTTGTGCTTTTCCAGCAAGTCGATTGGGATTGCAAGGGATAGGAATTAGTCCAGACTGCAATCCTGAAAACGTGTGTAGCCCACGACAG

Basic information

species Glycine max
transcript GLYMA15G05300.2
intron # 6
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA15G05300.1 (Glycine max), 3'ss of exon 5
lower sequence: LOC_Os11g34370.1 (Oryza sativa), 3'ss of exon 5
---ctctattatgt-ttcaattcagatgtgactaaacagatttgatttatcatgtt-tatatattgtcgcgtttcaacctcggtgagtatttacctctttcacagGTTCGTGTTTGTGCTTTTCCAGCAAGTCGATTGGGATTGCAAGGGATAGGAATTAGTCCAGACTGCAATCCTGAAAACGTGTGTAGCCCACGACAG
   ||   || |||   ||  |  ||||     ||   ||    || |  |||| |   | | |||    | || |  || |   | |||   |  |  |  ||||||||  |||||||||| ||||| |||||| | |||||||||||||| || |||||||||||||||||||| || |||     |||||| ||||||
gtactactttgtgtacacatctttgatgcatacaacaggac--aatgtgccatgctgcctgttttgcaatgctt-attcttgac-actatgc-ctacaattgcagGTTCGAATTTGTGCTTTCCCAGCCAGTCGACTAGGATTGCAAGGGATTGGTATTAGTCCAGACTGCAATCCGGAGAACAGAGCTAGCCCCCGACAG

upper sequence: GLYMA15G05300.1 (Glycine max), 3'ss of exon 5
lower sequence: Vv12s0034g01170.t01 (Vitis vinifera), 3'ss of exon 5
-ctctattatgtttcaattcagatgtgactaaacagatttgat-ttatcatgtttatatattgtcgcgtttcaacctcggtgagtatttacctct----ttcacagGTTCGTGTTTGTGCTTTTCCAGCAAGTCGATTGGGATTGCAAGGGATAGGAATTAGTCCAGACTGCAATCCTGAAAACGTGTGTAGCCCACGACAG
 |  |  |   ||  |||||   |||| | ||  | | | ||| || |||||| || ||   |   | ||| ||  |   ||| || | |    |    ||  ||||||||||| |||||||| || ||| |||| ||||| ||| | ||||| || || |||||||||||||||||||||||   |  || ||| ||| ||
tcatttgtgccttcaaattc---tgtggcaaataaaactggatcttttcatgtatacat---gaaacattttaaagttaatgaatactcaatattgttgtttgcagGTTCGTGTCTGTGCTTTCCCCGCAGGTCGGTTGGGGTTGGATGGGATTGGGATAAGTCCAGACTGCAATCCTGAAAATAGGGCTACCCCTCGAGAG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|51863751|gb|CV128232.1|CV128232
EST:     TCCGACTATTGCCGAGCAATTTTTGGATATCAAACGGACTTCCTCAGAAG                         GTTCGTGTTTGTGCTTTTCCAGCAAGTCGATTGGGATTGCAAGGGATAGGA
genomic: TCCGACTATTGCCGAGCAATTTTTGGATATCAAACGGACTTCCTCAGAAGgtaattttaa ... tctttcacagGTTCGTGTTTGTGCTTTTCCAGCAAGTCGATTGGGATTGCAAGGGATAGGA
EST: gi|17962970|gb|BM269725.1|BM269725
EST:     TCCGACTATTGCCGAGCAATTTTTGGATATCAAACGGACTTCCTCAGAAG                         GTTCGTGTTTGTGCTTTTCCAGCAAGTCGATTGGGATTGCAAGGGATAGGA
genomic: TCCGACTATTGCCGAGCAATTTTTGGATATCAAACGGACTTCCTCAGAAGgtaattttaa ... tctttcacagGTTCGTGTTTGTGCTTTTCCAGCAAGTCGATTGGGATTGCAAGGGATAGGA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tcatgtttatatattgtcgcgtttcaacctcggtgagtatttacctctttcacagGTTCGTGTTTGTGCTTTTCCAGCAAGTCGATTGGGATTGCAAGGGATAGGAATTAGTCCAGACTGCAATCCTGAAAACGTGTGTAGCCCACGACAG
                                     tatttacctctttc  CT-rich tract
     tttatatattgt  TA-rich tract