1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
gtctctctctctcactctccctctgaatttatcaacagctagtacgattttagaagtgatccttttttaatcttcttgtgtggccaccagataatattccccaagaatatgctgattgaccataactgtaaagtaactttttttgttataaaaatatttataaaatttctgagtattttctcttatttgatcagAGGATTTCAGATCTCTGCAAGAATGCTGGCTCTTGGCTTGTTGTTGATAATACATACGA
species | Glycine max |
transcript | GLYMA15G01520.1 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: TAAATCCAGGCAATCCATCTGGAACTTACATTCCAGAGCCCCTTCTAAAG AGGATTTCAGATCTCTGCAAGAATGCTGGCEST: gi|26058655|gb|CA801569.1|CA801569
genomic: TAAATCCAGGCAATCCATCTGGAACTTACATTCCAGAGCCCCTTCTAAAGgtctctctct ... atttgatcagAGGATTTCAGATCTCTGCAAGAATGCTGGC
EST: TAAATCCAGGCAATCCATCTGGAACTTACATTCCAGAGCCCCTTCTAAAG AGGATTTCAGATCTCTGCAAGAATGCTGGCTCTTGGCTTGTTGTTGATAATEST: gi|4313781|gb|AI460900.1|AI460900
genomic: TAAATCCAGGCAATCCATCTGGAACTTACATTCCAGAGCCCCTTCTAAAGgtctctctct ... atttgatcagAGGATTTCAGATCTCTGCAAGAATGCTGGCTCTTGGCTTGTTGTTGATAAT
EST: TAAATCCAGGCAATCCATCTGGAACTTACATTCCAGAGCCCCTTCTAAAG AGGATTTCAGATCTCTGCAAGAATGCTGGCTCTTGGCTTGTTGTTGATAATEST: gi|37995957|gb|CF807546.1|CF807546
genomic: TAAATCCAGGCAATCCATCTGGAACTTACATTCCAGAGCCCCTTCTAAAGgtctctctct ... atttgatcagAGGATTTCAGATCTCTGCAAGAATGCTGGCTCTTGGCTTGTTGTTGATAAT
EST: TAAATCCAGGCAATCCATCTGGAACTTACATTCCAGAGCCCCTTCTAAAG AGGATTTCAGATCTCTGCAAGAATGCTGGCTCTTGGCTTGTTGTTGATAATEST: gi|208247343|gb|GE048959.1|GE048959
genomic: TAAATCCAGGCAATCCATCTGGAACTTACATTCCAGAGCCCCTTCTAAAGgtctctctct ... atttgatcagAGGATTTCAGATCTCTGCAAGAATGCTGGCTCTTGGCTTGTTGTTGATAAT
EST: TAAATCCAGGCAATCCATCTGGAACTTACATTCCAGAGCCCCTTCTAAAG AGGATTTCAGATCTCTGCAAGAATGCTGGCTCTTGGCTTGTTGTTGATAATEST: gi|151399034|gb|EV268905.1|EV268905
genomic: TAAATCCAGGCAATCCATCTGGAACTTACATTCCAGAGCCCCTTCTAAAGgtctctctct ... atttgatcagAGGATTTCAGATCTCTGCAAGAATGCTGGCTCTTGGCTTGTTGTTGATAAT
EST: TAAATCCAGGCAATCCATCTGGAACTTACATTCCAGAGCCCCTTCTAAAG AGGATTTCAGATCTCTGCAAGAATGCTGGCTCTTGGCTTGTTGTTGATAATEST: gi|13477614|gb|BG507424.1|BG507424
genomic: TAAATCCAGGCAATCCATCTGGAACTTACATTCCAGAGCCCCTTCTAAAGgtctctctct ... atttgatcagAGGATTTCAGATCTCTGCAAGAATGCTGGCTCTTGGCTTGTTGTTGATAAT
EST: TAAATCCAGGCAATCCATCTGGAACTTACATTCCAGAGCCCCTTCTAAAG AGGATTTCAGATCTCTGCAAGAATGCTGGCTCTTGGCTTGTTGTTGATAATEST: gi|7233283|gb|AW568631.1|AW568631
genomic: TAAATCCAGGCAATCCATCTGGAACTTACATTCCAGAGCCCCTTCTAAAGgtctctctct ... atttgatcagAGGATTTCAGATCTCTGCAAGAATGCTGGCTCTTGGCTTGTTGTTGATAAT
EST: TAAATCCAGGCAATCCATCTGGAACTTACATTCCAGAGCCCCTTCTAAAG AGGATTTCAGATCTCTGCAAGAATGCTGGCTCTTGGCTTGTTGTTGATAAT
genomic: TAAATCCAGGCAATCCATCTGGAACTTACATTCCAGAGCCCCTTCTAAAGgtctctctct ... atttgatcagAGGATTTCAGATCTCTGCAAGAATGCTGGCTCTTGGCTTGTTGTTGATAAT
tttttgttataaaaatatttataaaatttctgagtattttctcttatttgatcagAGGATTTCAGATCTCTGCAAGAATGCTGGCTCTTGGCTTGTTGTTGATAATACATACGA
tattttctcttattt CT-rich tract
ttataaaaatatttat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtctctctctctcactctccctctgaatttatcaacagctagtacgattttagaagtgatccttttttaatcttcttgtgtggccaccagataatattccccaagaatatgctgattgaccataactgtaaagtaactttttttgttataaaaatatttataaaatttctgagtattttctcttatttgatcagAGGATTTCAGATCTCTGCAAGAATGCTGGCTCTTGGCTTGTTGTTGATAATACATACGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG