1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
...taagtacaatttaattgtacaaatgtaaaaatgagagagatcgaaaactaaaaaagctttattaattgatgaattttgtttattactatgtgaatggcagTTCATCACTTTTGGATTTGCTTGCACACCATTGTATTTTGTGTGGGAGAAGGTGATAGGAATGCATGACACAAAGAGCATATGTTTGAGGGCACTTGCTA
species | Glycine max |
transcript | GLYMA14G06600.1 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: CCCGCTCTGGTTGGCGCGATGCCGGTGTCATCTTAATGCTGATTCATCAG TTCATCACTTTTGGATTTGCTTGCACACCATTGTATTTTGTGTGGGAGAAGEST: gi|11275139|gb|BF325462.1|BF325462
genomic: CCCGCTCTGGTTGGCGCGATGCCGGTGTCATCTTAATGCTGATTCATCAGgtccaacaat ... tgaatggcagTTCATCACTTTTGGATTTGCTTGCACACCATTGTATTTTGTGTGGGAGAAG
EST: CCCGCTCTGGTTGGCGCGATGCCGGTGTCATCTTAATGCTGATTCATCAG TTCATCACTTTTGGATTTGCTTGCACACCATTGTATTTTGTGTGGGAGAAGEST: gi|298191309|gb|HO038788.1|HO038788
genomic: CCCGCTCTGGTTGGCGCGATGCCGGTGTCATCTTAATGCTGATTCATCAGgtccaacaat ... tgaatggcagTTCATCACTTTTGGATTTGCTTGCACACCATTGTATTTTGTGTGGGAGAAG
EST: CCCGCTCTGGTTGGCGCGATGCCGGTGTCATCTTAATGCTGATTCATCAG TTCATCACTTTTGGATTTGCTTGCACACCATTGTATTTTGTGTGGGAGAAG
genomic: CCCGCTCTGGTTGGCGCGATGCCGGTGTCATCTTAATGCTGATTCATCAGgtccaacaat ... tgaatggcagTTCATCACTTTTGGATTTGCTTGCACACCATTGTATTTTGTGTGGGAGAAG
aactaaaaaagctttattaattgatgaattttgtttattactatgtgaatggcagTTCATCACTTTTGGATTTGCTTGCACACCATTGTATTTTGTGTGGGAGAAGGTGATAGGAATGCATGACACAAAGAGCATATGTTTGAGGGCACTTGCTA
aaaaagctttattaat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| taagtacaatttaattgtacaaatgtaaaaatgagagagatcgaaaactaaaaaagctttattaattgatgaattttgtttattactatgtgaatggcagTTCATCACTTTTGGATTTGCTTGCACACCATTGTATTTTGTGTGGGAGAAGGTGATAGGAATGCATGACACAAAGAGCATATGTTTGAGGGCACTTGCTA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCA
- - - - - - - - - - - - - - - - - - - - - - - - taaaaaa