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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatcagaagcaaccccattgccattgaatttttcgtactttgaaacttcttttctcttgtctatatgtagttttgtagtcatggaattttcttttttgtttttacattagctttgtaattgacagcatttacatgttaattatacagCTGCAAACATTTTATTGTCTGAGAATGGTGATGTAAAG

Basic information

species Glycine max
transcript GLYMA13G34970.1
intron # 6
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|209719593|gb|BW672074.1|BW672074
EST:     TGCTGTTGATTATCTACATAGTGAAGGAAAAATTCATAGAGACATTAAAG                         CTGCAAACATTTTATTGTCTGAGAATGGTGATGTAAAG
genomic: TGCTGTTGATTATCTACATAGTGAAGGAAAAATTCATAGAGACATTAAAGgtatcagaag ... aattatacagCTGCAAACATTTTATTGTCTGAGAATGGTGATGTAAAG






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tttttgtttttacattagctttgtaattgacagcatttacatgttaattatacagCTGCAAACATTTTATTGTCTGAGAATGGTGATGTAAAG
                                         tgttaat  putative branch site (score: 3)
                                  atttacatgttaatta  TA-rich tract