1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
gttgtgcgctgtgctctcgctgatatatgtttctcttgtccgtgtaaattattatatatagaagcacccaatttttaactaaattggctaatcaacttcttttgttttgttttcatctagTTCCTGCCAGTGGTGGAAGGAACCGGGATAGGATCCCTGGAGAGGGAGCAAACTGAAAAAATATTGAACAAGATCATCTCCAAGAATTCTCATAACATAC
species | Glycine max |
transcript | GLYMA13G23700.1 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: AGAAATTGGCAGGTGAAAAGCCTCAGAAACATGAAGGAAAATATCGGAAG TTCCTGCCAGTGGTGGAAGGAACCGGGATAGGATCCCTGGAGAGGGAGCAAEST: gi|254320386|gb|GR826403.1|GR826403
genomic: AGAAATTGGCAGGTGAAAAGCCTCAGAAACATGAAGGAAAATATCGGAAGgttgtgcgct ... tttcatctagTTCCTGCCAGTGGTGGAAGGAACCGGGATAGGATCCCTGGAGAGGGAGCAA
EST: AGAAATTGGCAGGTGAAAAGCCTCAGAAACATGAAGGAAAATATCGGAAG TTCCTGCCAGTGGTGGAAGGAACCGGGATAGGATCCCTGGAGAGGGAGCAAEST: gi|193675378|gb|FK616466.1|FK616466
genomic: AGAAATTGGCAGGTGAAAAGCCTCAGAAACATGAAGGAAAATATCGGAAGgttgtgcgct ... tttcatctagTTCCTGCCAGTGGTGGAAGGAACCGGGATAGGATCCCTGGAGAGGGAGCAA
EST: AGAAATTGGCAGGTGAAAAGCCTCAGAAACATGAAGGAAAATATCGGAAG TTCCTGCCAGTGGTGGAAGGAACCGGGATAGGATCCCTGGAGAGGGAGCAAEST: gi|207826496|gb|GD798193.1|GD798193
genomic: AGAAATTGGCAGGTGAAAAGCCTCAGAAACATGAAGGAAAATATCGGAAGgttgtgcgct ... tttcatctagTTCCTGCCAGTGGTGGAAGGAACCGGGATAGGATCCCTGGAGAGGGAGCAA
EST: AGAAATTGGCAGGTGAAAAGCCTCAGAAACATGAAGGAAAATATCGGAAG TTCCTGCCAGTGGTGGAAGGAACCGGGATAGGATCCCTGGAGAGGGAGCAAEST: gi|208039255|gb|GD832341.1|GD832341
genomic: AGAAATTGGCAGGTGAAAAGCCTCAGAAACATGAAGGAAAATATCGGAAGgttgtgcgct ... tttcatctagTTCCTGCCAGTGGTGGAAGGAACCGGGATAGGATCCCTGGAGAGGGAGCAA
EST: AGAAATTGGCAGGTGAAAAGCCTCAGAAACATGAAGGAAAATATCGGAAG TTCCTGCCAGTGGTGGAAGGAACCGGGATAGGATCCCTGGAGAGGGAGCAAEST: gi|193581998|gb|FK536909.1|FK536909
genomic: AGAAATTGGCAGGTGAAAAGCCTCAGAAACATGAAGGAAAATATCGGAAGgttgtgcgct ... tttcatctagTTCCTGCCAGTGGTGGAAGGAACCGGGATAGGATCCCTGGAGAGGGAGCAA
EST: AGAAATTGGCAGGTGAAAAGCCTCAGAAACATGAAGGAAAATATCGGAAG TTCCTGCCAGTGGTGGAAGGAACCGGGATAGGATCCCTGGAGAGGGAGCAAEST: gi|15204065|gb|BI426833.1|BI426833
genomic: AGAAATTGGCAGGTGAAAAGCCTCAGAAACATGAAGGAAAATATCGGAAGgttgtgcgct ... tttcatctagTTCCTGCCAGTGGTGGAAGGAACCGGGATAGGATCCCTGGAGAGGGAGCAA
EST: AGAAATTGGCAGGTGAAAAGCCTCAGAAACATGAAGGAAAATATCGGAAG TTCCTGCCAGTGGTGGAAGGAACCGGGATAGGATCCCTGGAGAGGGAGCAA
genomic: AGAAATTGGCAGGTGAAAAGCCTCAGAAACATGAAGGAAAATATCGGAAGgttgtgcgct ... tttcatctagTTCCTGCCAGTGGTGGAAGGAACCGGGATAGGATCCCTGGAGAGGGAGCAA
acccaatttttaactaaattggctaatcaacttcttttgttttgttttcatctagTTCCTGCCAGTGGTGGAAGGAACCGGGATAGGATCCCTGGAGAGGGAGCAAACTGAAAAAATATTGAACAAGATCATCTCCAAGAATTCTCATAACATAC
cttcttttgttttgtt CT-rich tract
atttttaactaaatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gttgtgcgctgtgctctcgctgatatatgtttctcttgtccgtgtaaattattatatatagaagcacccaatttttaactaaattggctaatcaacttcttttgttttgttttcatctagTTCCTGCCAGTGGTGGAAGGAACCGGGATAGGATCCCTGGAGAGGGAGCAAACTGAAAAAATATTGAACAAGATCATCTCCAAGAATTCTCATAACATAC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGATCA