Sequence
atgc intronic sequence ATGC exonic sequence...aactaatgagtaaaacaatctgtttgaagggggagacaaatacaaactttttttttagttcttggttactgacttttgtatatttggtgttcttttgcagGTTTTGTTGCTAATGAGAAACCTCACTGTCAACTTGTCTAGCCCTGACTTCGAACCCATT
Basic information
| species | Glycine max |
| transcript | GLYMA13G19910.1 |
| intron # | 6 |
| splice site | 3' |
| intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA13G19910.1 (Glycine max), 3'ss of exon 6
lower sequence: Vv08s0040g03220.t01 (Vitis vinifera), 3'ss of exon 6
aactaatgagtaaaacaatctg--tttgaagggggagacaaatacaaactttttttttagttcttggttactgacttttgtatatttggtgttcttttgcagGTTTTGTTGCTAATGAGAAACCTCACTGTCAACTTGTCTAGCCCTGACTTCGAACCCATT
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--ttacccacttgaatcatatgaatttgattaatgattctcttactatgaaggatatttcttgtcagaagaatgctaatgagtctatgtggaacttttgtagGTATTATTGTTGATGAGAAACCTCACTATCAACTTGTCTAGCCCTGATTTTGAGCCAATTMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|209729062|gb|BW651787.1|BW651787EST: ATGACCATGTCCAGAAGCTGAAGGAAATGGATCCTATAAATTTTGAAACT GTTTTGTTGCTAATGAGAAACCTCACTGTCAACTTGTCTAGCCCTGACTTC
genomic: ATGACCATGTCCAGAAGCTGAAGGAAATGGATCCTATAAATTTTGAAACTgtgagttgaa ... tcttttgcagGTTTTGTTGCTAATGAGAAACCTCACTGTCAACTTGTCTAGCCCTGACTTC
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.actttttttttagttcttggttactgacttttgtatatttggtgttcttttgcagGTTTTGTTGCTAATGAGAAACCTCACTGTCAACTTGTCTAGCCCTGACTTCGAACCCATT
tactgac putative branch site (score: 1)
tgttctttt putative PPT
acttttgtatattt TA-rich tract
