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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gttcctgattaatacttttatttgttacatggaaatcaaattggttttcatcttatattaaagtgttactttttgccccccttaactatttaagtgtctgttaaagGAATACAACATAGCTGAAAGGATAGAAAAAGAAGGGAAAGGTTGTGTGATAGTTGTAAACAAGTGGGATACAATACCAAATAAAAACCAGCAGACTGCAT

Basic information

species Glycine max
transcript GLYMA11G14170.1
intron # 6
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA11G14170.1 (Glycine max), 3'ss of exon 6
lower sequence: GRMZM2G302233_T01 (Zea mays), 3'ss of exon 8
----gttcctgattaatacttttatttgttacatggaaatcaaattggttttcatcttatattaaagtgttactttttgccccccttaactatttaagtgtctgttaaagGAATACAACATAGCTGAAAGGATAGAAAAAGAAGGGAAAGGTTGTGTGATAGTTGTAAACAAGTGGGATACAATACCAAATAAAAACCAGCAGACTGCAT
    |||    || || || | ||| | |         |  | |    |  |  |||| |||      ||| | ||||  | |  | || | ||   || ||     ||||| || || || || || ||||| ||||||||||| || | |||||| || ||||| ||||| ||||||||||| ||||| || |||||  ||| | || 
gtatgttaactatgaacacatgtatgtttagacccatgaagagacatatgattgtcttgtat------gtt-cattttaacacaatgaattcttgtggtatc-----aagGATTATAAAATTGCAGAGAGGATTGAAAAAGAAGGAAAGGCTTGTGTCATTGTTGTGAACAAATGGGATACAATCCCAAACAAGAACCACGAGAGTACAA

upper sequence: GLYMA11G14170.1 (Glycine max), 3'ss of exon 6
lower sequence: AT3G12080.2 (Arabidopsis thaliana), 3'ss of exon 8
------gttcctgattaatacttttat-ttgttacatggaaatca-aattggttttcatcttatattaaagtgttactttttgccccccttaactatttaagtgtctgttaaagGAATACAACATAGCTGAAAGGATAGAAAAAGAAGGGAAAGGTTGTGTGATAGTTGTAAACAAGTGGGATACAATACCAAATAAAAACCAGCAGACTGCAT
       |  |  |  | ||| ||  | |||| |||  | ||  |  ||    |||| | | || | |||        |||| |      ||  ||||  |         | ||||    || || || ||||| ||||||| |||||||||||| ||| || | ||||||||||| |||||||||||||| || ||||||||  |||||||| 
gatttgataacacaaaagtaccttgctattgtaacaaaggaaaaatgatgaactttcttatcatgtgaaa--------tttttctaatggtatgtattggaaa------cacagGATCTGAAGATTGCAGAAAGAATAGAAAGAGAAGGGAAAGGATGTCTGGTTGTTGTAAACAAATGGGATACAATACCGAACAAAAACCAAGAGACTGCAG

upper sequence: GLYMA11G14170.1 (Glycine max), 3'ss of exon 6
lower sequence: Vv06s0004g02070.t01 (Vitis vinifera), 3'ss of exon 9
gttcctgattaatacttttatttg-ttacatggaaatcaaattggttttcatcttatattaaagtgttactttttgcccccctta-actatttaagtgtctg---ttaaagGAATACAACATAGCTGAAAGGATAGAAAAAGAAGGGAAAGGTTGTGTGATAGTTGTAAACAAGTGGGATACAATACCAAATAAAAACCAGCAGACTGCAT
             |   |    || || ||    | |    ||   ||  | |   |   |  |    | | |||||       |   | ||| | ||       ||  |||| || |  || ||||| ||||| |||| ||||||||| |||||  |||| ||||||||||| |||||||| ||||||||||||||||| ||||||||| 
-----------gcatcatggactgctttcagatgagttgctttttattgtaccccctcgaagggaaaaaatatttgctgataaaatgatgtttcactgctgaaaattgtagGACTATAGGATTGCTGAGAGGATTGAAAGAGAAGGGAAGGGTTGCCTGATTGTTGTAAACAAATGGGATACTATACCAAATAAAAACCAACAGACTGCAA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

cttatattaaagtgttactttttgccccccttaactatttaagtgtctgttaaagGAATACAACATAGCTGAAAGGATAGAAAAAGAAGGGAAAGGTTGTGTGATAGTTGTAAACAAGTGGGATACAATACCAAATAAAAACCAGCAGACTGCAT
                            ccttaac  putative branch site (score: 3)
                              ttaactatttaagt  TA-rich tract