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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagaaccttagtgagctcctgttgttttagccttttgtttgacataatgtgattctcttgttaatagcatctggaactatttattgatctgtttgttatgtttatataacacgagttataccaataaggcaataactacaaatttgaattataactattttttttttttaatttctgaatgtgttgcagCAAATGGGAGGCATTCAAATTGGCATCACTTTCTGGCTTTGCTGAGCCACTGGGCGTTGTAATTGTAG

Basic information

species Glycine max
transcript GLYMA11G14090.1
intron # 6
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA11G14090.1 (Glycine max), 3'ss of exon 6
lower sequence: Vv06s0004g01860.t01 (Vitis vinifera), 3'ss of exon 8
gtaagaaccttagtgagctcctgttgttttagccttttgtttgacataatgtgattctcttgttaatagcatctggaactatttattgatctgtttgttatgtttatataacacgagttataccaataaggcaataactacaaatttgaattataactattttttttttttaatttctgaatgtgttgcagCAAATGGGAGGCATTCAAATTGGCATCACTTTCTGGCTTTGCTGAGCCACTGGGCGTTGTAATTGTAG
|||||||  |   | ||   ||||   |||||| ||||        ||| ||  |    | || |  |  |     |   ||| |||||| | ||| |    ||| || |||  || ||||  | | | ||                            ||  ||||| |  ||| ||          |||||||||| |||| |||||| ||||| | |||||||||||||||||||| ||||| ||| |||||||||
gtaagaatttctttaaggcactgtaagtttagcttttt--------taaagtactcaagtagtaaggaaaaaaaaaattgattgattgatttatttatggc-tttttaaaac-tgatttatctctaaatgg----------------------------ttcctttttatatattcct----------cagCAAATGGCAGGCCTTCAAACTGGCAACTCTTTCTGGCTTTGCTGAGCCCCTGGGTGTTATAATTGTAG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|5058120|gb|AI736596.1|AI736596
EST:     GGCGTTGCTGTTGCCCTTCCTGTCTATTTTGCGACACAGAG                         CAAATGGGAGGCATTCAAATTGGCATCACTTTCTGGCTTTGCTGAGCCACT
genomic: GGCGTTGCTGTTGCCCTTCCTGTCTATTTTGCGACACAGAGgtaagaacct ... tgtgttgcagCAAATGGGAGGCATTCAAATTGGCATCACTTTCTGGCTTTGCTGAGCCACT
EST: gi|58014695|gb|CX701437.1|CX701437
EST:     GGCGTTGCTGTTGCCCTTCCTGTCTATTTTGCGACACAGAG                         CAAATGGGAGGCATTCAAATTGGCATCACTTTCTGGCTTTGCTGAGCCACT
genomic: GGCGTTGCTGTTGCCCTTCCTGTCTATTTTGCGACACAGAGgtaagaacct ... tgtgttgcagCAAATGGGAGGCATTCAAATTGGCATCACTTTCTGGCTTTGCTGAGCCACT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

actacaaatttgaattataactattttttttttttaatttctgaatgtgttgcagCAAATGGGAGGCATTCAAATTGGCATCACTTTCTGGCTTTGCTGAGCCACTGGGCGTTGTAATTGTAG
     aaatttgaattataac  TA-rich tract