Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   		13  
 5'  3'   		14  
 5'  3'   		15  
 5'  3'   		16  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgtgatgctaaacttttgtttgcttaaagttcctgagcactgtaacttactagtttaatttacactcacctgggtttatatactatatagttaatgtgtgagaggtttactatgttaactatttatttgtctggttctactgttatagctcacatgtaacactttttacagGGTGATGGTTCATGGCATGGAGGCTGCTTAGCTTTGGCTGAACTTGCTCGTAGGGGCTTGCTCTTACCTGCTAGTCTTCCCAAAGTTGTTCCTTTTATCG

Basic information

species Glycine max
transcript GLYMA10G42560.1
intron # 6
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA10G42560.1 (Glycine max), 3'ss of exon 6
lower sequence: LOC_Os10g36490.1 (Oryza sativa), 3'ss of exon 6
gtgtgatgctaaacttttgtttgcttaaagttcctgagcactgtaacttactagtttaatttacactca--cctgggtttatatactatatagttaatgtgtgagaggtttactatgttaactatttatttgtctggttctactgttatagctcacatgtaacactttttacagGGTGATGGTTCATGGCATGGAGGCTGCTTAGCTTTGGCTGAACTTGCTCGTAGGGGCTTGCTCTTACCTGCTAGTCTTCCCAAAGTTGTTCCTTTTATCG
                  ||||| || |||  |    | | | |||   |  | || | |||  |   |  |||  ||||  || || ||   || |   |||  ||   | ||  || ||| |    | | |        ||  ||||  ||     ||       | |  ||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||  || |  | ||| ||||  ||||  | ||| ||||| ||||  
------------------gtttg-ttgaagaactcatgtagtttaagacatcatttgactttttaaatattcctcagtttccat-ctctacctttcaaaagtgcaag---tcctgagtgaaccacaagtatat--------acc-ttatgacttttgggt-------tctgaagGGTGATGGTTCCTGGCATGGAGGCTGCTTGGCTTTGGCTGAACTTGCTCGTAGGGGACTGTTGCTGCCTTCTAGCTTTCCTGATGTTATTCCTGTTATAA

upper sequence: GLYMA10G42560.1 (Glycine max), 3'ss of exon 6
lower sequence: Vv15s0048g00470.t01 (Vitis vinifera), 3'ss of exon 6
gtgtgatgctaaacttttgtttgcttaaagttcctgagcactgtaactta-----ctagt--ttaatttacactcacctggg---tttatatact-----atatagttaatgtgtgagaggtttactatgttaac---tatttat--ttgtctggttct---------actgttatagctcacatgtaacactttttacagGGTGATGGTTCATGGCATGGAGGCTGCTTAGCTTTGGCTGAACTTGCTCGTAGGGGCTTGCTCTTACCTGCTAGTCTTCCCAAAGTTGTTCCTTTTATCG
|| || || | |  |      |  |    |||||  |    ||||||  |     | ||   | |  |||||    | | |    |  ||||||      |||   ||    ||     |  |    || |   |   | |||||  |||||   || |         | ||||||| || | | || | | | |||  |||| ||||||||||||||||| ||||||||||||||||||||||| || |||||||| |||||||||||    ||  ||||||||||||| ||  || | |
gtatgctggtcagttgcctccttttgtctgttccaaaattttgtaaccaaaatggccagcaatcatgttacaaaagcttagaagttacatatacctgggaataccattgccatgcccatgactcttcatttcttcctttgtttatctttgtccaattttgagaaattaaatgttata-ctgatacgtcata-tgtttgtagGGAGATGGTTCATGGCATGGGGGCTGCTTAGCTTTGGCTGAACTGGCACGTAGGGGATTGCTCTTACCAATCAGCTTTCCCAAAGTTGTACCGGTTGTTG


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

aactatttatttgtctggttctactgttatagctcacatgtaacactttttacagGGTGATGGTTCATGGCATGGAGGCTGCTTAGCTTTGGCTGAACTTGCTCGTAGGGGCTTGCTCTTACCTGCTAGTCTTCCCAAAGTTGTTCCTTTTATCG
                                           cacttttt  CT-rich tract
     tttatttgt  TA-rich tract