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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatgagagtccagacatttgtgtatctaggagtatgacttatttattgttagaaaaatgtaaatccagttccagacttctgtttaccataactgaagaaatgcaaatttgcagGTCAATGTTACCGCTGATCATCGAGTAATCTATGGTGCTGATTTGGCTTCATTCTTGCAAACCCTGACCCAGATTATTGAGGACCCCAAAGATCTTACTT

Basic information

species Glycine max
transcript GLYMA10G35960.1
intron # 6
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA10G35960.1 (Glycine max), 3'ss of exon 6
lower sequence: Vv18s0072g01000.t01 (Vitis vinifera), 3'ss of exon 5
gtatgagagtccagacatttgtgtatctaggagtatgacttatttattgttagaaaaatgtaaatccagttccagacttctgtttaccataactgaagaaatgcaa-atttgcagGTCAATGTTACCGCTGATCATCGAGTAATCTATGGTGCTGATTTGGCTTCATTCTTGCAAACCCTGACCCAGATTATTGAGGACCCCAAAGATCTTACTT
   | |   |||  | || | | |  | |     |  | || |  |   |  |     | |  ||  | ||      |||   ||||     |||   | |||||| || ||||||| |||||||| || |||||||| ||||| |||||||||||| ||||||| |||||||||||| || || ||||||| || |||||||||||||||||||
--gtaattttccttagatctctctccccaaattgagaatttctacaccatgtg-----tttggatttattttacagtttc---ttac----gctgggaacatgcaatatctgcagGTGAATGTTACAGCAGATCATCGGGTAATATATGGTGCTGATCTGGCTTCTTTCTTGCAAACCTTGGCCAAGATTATAGAAGACCCCAAAGATCTTACTT
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|22928634|gb|BU545773.1|BU545773
EST:     GGTCGCATTGGAATGAAGAACCAAATGCAG                         GTCAATGTTACCGCTGATCATCGAGTAATCTATGGTGCTGATTTGGCTTCA
genomic: GGTCGCATTGGAATGAAGAACCAAATGCAGgtatgagagt ... aaatttgcagGTCAATGTTACCGCTGATCATCGAGTAATCTATGGTGCTGATTTGGCTTCA
EST: gi|193397613|gb|FK365075.1|FK365075
EST:     CTGTTGTGGCTACAAAGGATGGTCGCATTGGAATGAAGAACCAAATGCAG                         GTCAATGTTACCGCTGATCATCGAGTAATCTATGGTGCTGATTTGGCTTCA
genomic: CTGTTGTGGCTACAAAGGATGGTCGCATTGGAATGAAGAACCAAATGCAGgtatgagagt ... aaatttgcagGTCAATGTTACCGCTGATCATCGAGTAATCTATGGTGCTGATTTGGCTTCA
EST: gi|7691722|gb|AW759844.1|AW759844
EST:     GGTCGCATTGGAATGAAGAACCAAATGCAG                         GTCAATGTTACCGCTGATCATCGAGTAATCTATGGTGCTGATTTGGCTTCA
genomic: GGTCGCATTGGAATGAAGAACCAAATGCAGgtatgagagt ... aaatttgcagGTCAATGTTACCGCTGATCATCGAGTAATCTATGGTGCTGATTTGGCTTCA
EST: gi|10844471|gb|BF071007.1|BF071007
EST:     GTGGCTACAAAGGATGGTCGCATTGGAATGAAGAACCAAATGCAG                         GTCAATGTTACCGCTGATCATCGAGTAATCTATGGTGCTGATTTGGCTTCA
genomic: GTGGCTACAAAGGATGGTCGCATTGGAATGAAGAACCAAATGCAGgtatgagagt ... aaatttgcagGTCAATGTTACCGCTGATCATCGAGTAATCTATGGTGCTGATTTGGCTTCA
EST: gi|193636258|gb|FK580767.1|FK580767
EST:     GGAATGAAGAACCAAATGCAG                         GTCAATGTTACCGCTGATCATCGAGTAATCTATGGTGCTGATTTGGCTTCG
genomic: GGAATGAAGAACCAAATGCAGgtatgagagt ... aaatttgcagGTCAATGTTACCGCTGATCATCGAGTAATCTATGGTGCTGATTTGGCTTCA
EST: gi|193604520|gb|FK555915.1|FK555915
EST:     CTGTTGTGGCTACAAAGGATGGTCGCATTGGAATGAAGAACCAAATGCAG                         GTCAATGTTACTGCTGATCATCGAGTAATCTATGGTGCTGATTTGGCTTCA
genomic: CTGTTGTGGCTACAAAGGATGGTCGCATTGGAATGAAGAACCAAATGCAGgtatgagagt ... aaatttgcagGTCAATGTTACCGCTGATCATCGAGTAATCTATGGTGCTGATTTGGCTTCA
EST: gi|193417002|gb|FK382036.1|FK382036
EST:     CTGTTGTGGCTACAAAGGATGGTCGCATTGGAATGAAGAACCAAATGCAG                         GTCAATGTTACCGCTGATCATCGAAGTAAATAACTATGGTGCT
genomic: CTGTTGTGGCTACAAAGGATGGTCGCATTGGAATGAAGAACCAAATGCAGgtatgagagt ... aaatttgcagGTCAATGTTACCGCTGATCATCGA-GTAA-T--CTATGGTGCT
EST: gi|193609247|gb|FK561159.1|FK561159
EST:     CTGTTGTGGCTACAAAGGATGGTCGCATTGGAATGAAGAACCAAATGCAG                         GTCAATGTTACCGCTGATCATCGAGTAATCTATGGTGCTGATTTGGCTTCA
genomic: CTGTTGTGGCTACAAAGGATGGTCGCATTGGAATGAAGAACCAAATGCAGgtatgagagt ... aaatttgcagGTCAATGTTACCGCTGATCATCGAGTAATCTATGGTGCTGATTTGGCTTCA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gtaaatccagttccagacttctgtttaccataactgaagaaatgcaaatttgcagGTCAATGTTACCGCTGATCATCGAGTAATCTATGGTGCTGATTTGGCTTCATTCTTGCAAACCCTGACCCAGATTATTGAGGACCCCAAAGATCTTACTT
                           ccataac  putative branch site (score: 3)
                                             aaattt  TA-rich tract