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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatttctcaattttttgtttccttgtgctgcataaacatcactttatgctgtagttacttattagattaattgctgatgctgtagCCTGAAGATTGGGATGATGAGGAAGATGGTGAGTGGACACCCCCTACCATTGCCAACCCTGAGTACAAGGGCCCATGGAAGGCAGAG

Basic information

species Glycine max
transcript GLYMA10G28890.1
intron # 6
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA10G28890.1 (Glycine max), 3'ss of exon 6
lower sequence: LOC_Os07g14270.2 (Oryza sativa), 3'ss of exon 6
--------gtatttctcaattttttgtttcc--ttgtgctgcataaacatcactttatgctgtagttacttattagattaattgctgatgctgtagCCTGAAGATTGGGATGATGAGGAAGATGGTGAGTGGACACCCCCTACCATTGCCAACCCTGAGTACAAGGGCCCATGGAAGGCAGAG
         | ||   | ||||| || ||    || |     || | | ||| | || | | ||   | || || |||     |    | ||||||||||| || |||||||||||||||||||||||||||||  | || |||||| | ||||||||||||||||| |||||||||  | ||
gtacttaattgttataccattttatggtttatgttatatatgatgagcgtcattctaggttttaaa-atttctttgat-----gtgatttctgtagCCTGAGGACTGGGATGATGAGGAAGATGGTGAGTGGACTGCACCAACCATTCCTAACCCTGAGTACAAGGGACCATGGAAGCAAAAG

upper sequence: GLYMA10G28890.1 (Glycine max), 3'ss of exon 6
lower sequence: LOC_Os03g61670.1 (Oryza sativa), 3'ss of exon 6
-----------------------------gtatttctcaatttttt------gtttccttgtgctgcat-aaacatcactttatgctgtagttacttattagat---taattgc---tgatgc------tgtagCCTGAAGATTGGGATGATGAGGAAGATGGTGAGTGGACACCCCCTACCATTGCCAACCCTGAGTACAAGGGCCCATGGAAGGCAGAG
                               ||||  || | || |        |||  || | ||||| || ||  |    ||     |     || |   |     || | |   | ||||      |  ||||||| || |||||||||||||||||||| || |||||| | || |||||| | ||||||||||||||||| ||||||||   | ||
gtatgtgttgccatttttattttaaatggacattttccattcttctcatacaagttcgatgagatgcatcaaccagtatgcgatttcacatcattttgtccaacatgcaacttcacattatgcaatctgtacagCCTGAGGACTGGGATGATGAGGAAGATGGAGAATGGACAGCTCCAACCATTCCAAACCCTGAGTACAAGGGACCATGGAACCAAAAG

upper sequence: GLYMA10G28890.1 (Glycine max), 3'ss of exon 6
lower sequence: GRMZM2G358059_T01 (Zea mays), 3'ss of exon 6
gtatttct-caattttttgtttccttgtgctgcataaacatcactttatgctgtagttacttattagattaattgctgatgctgtagCCTGAAGATTGGGATGATGAGGAAGATGGTGAGTGGACACCCCCTACCATTGCCAACCCTGAGTACAAGGGCCCATGGAAGGCAGAG
||| || |    || ||||||   | ||  |  || |  || | || ||    | | ||  ||     | || ||   ||  || ||||||| || ||||| ||||||||||||||||| |||||  ||||||||||| ||||||| || |||||||| ||||||||   | ||
gtacttatgtggttatttgttatgtagt-ttctatca-tatga-ttaataacatgggtatataaattctaaaatgtccat--tgcagCCTGAGGACTGGGACGATGAGGAAGATGGTGAATGGACTGCCCCTACCATTCCCAACCCAGAATACAAGGGACCATGGAAACAAAAG

upper sequence: GLYMA10G28890.1 (Glycine max), 3'ss of exon 6
lower sequence: GRMZM2G074687_T01 (Zea mays), 3'ss of exon 6
gtatttct-caattttttgtttccttgtgctgcataaacatcactttatgctgtagttacttattagattaattgctgatgctgtagCCTGAAGATTGGGATGATGAGGAAGATGGTGAGTGGACACCCCCTACCATTGCCAACCCTGAGTACAAGGGCCCATGGAAGGCAGAG
||| || |    || ||||||     || |||  |    |  |       | | |     |||| |  |  |          || ||||||| || |||||||| |||||||||||||| |||||  ||||||||||| ||||||| || ||||| || ||||||||   | ||
gtacttatgtggttatttgttatgcggt-ctgtgtcg-taggatggataacagcatgggtttataaattctaaaatgtgcattgcagCCTGAGGACTGGGATGACGAGGAAGATGGTGAATGGACTGCCCCTACCATTCCCAACCCAGAATACAAAGGACCATGGAAACAAAAG

upper sequence: GLYMA10G28890.1 (Glycine max), 3'ss of exon 6
lower sequence: AT1G09210.1 (Arabidopsis thaliana), 3'ss of exon 5
gtatttctcaattttttgtttccttgtgctgcataaaca-tcactttatgctgtagttacttattagattaattgctgatgctgt-agCCTGAAGATTGGGATGATGAGGAAGATGGTGAGTGGACACCCCCTACCATTGCCAACCCTGAGTACAAGGGCCCATGGAAGGCAGAG
||   |     | | |  ||    |    |  | || |  |  || | | | ||| || || |||   ||  |||    | || | ||||||| || ||||||||||| |||||||||||||||||  |||| || ||  ||||||||||||||| |||   ||||||| |  ||
gttcatacttgtctataattgatgtaaaatctaaaatctcttgctgtgttccgtatttgctgatt--tttcgttgtcctttctcttagCCTGAGGACTGGGATGATGAAGAAGATGGTGAGTGGACTGCCCCAACAATCCCCAACCCTGAGTACATGGGTGAATGGAAGCCTAAG

upper sequence: GLYMA10G28890.1 (Glycine max), 3'ss of exon 6
lower sequence: AT1G56340.1 (Arabidopsis thaliana), 3'ss of exon 4
gtatttctcaattttttgtttccttgtgctgcataaacatcactt-tatgctgtagttacttattagattaattgctgatgctgtagCCTGAAGATTGGGATGATGAGGAAGATGGTGAGTGGACACCCCCTACCATTGCCAACCCTGAGTACAAGGGCCCATGGAAGGCAGAG
     | | ||||||||  || | | || |||| || ||   ||  | |   ||    |  | ||   ||   | ||     | |||||||| || ||||||||||| |||||||||||||||||  ||||||||||| ||||||| |||||||| ||   ||||||| |  ||
----gtttgaatttttttcttgcat-tgatgcaaaaccaaatctgatttatcgtctcgaggttttgattttgatcctttgtttatagCCTGAGGACTGGGATGATGAAGAAGATGGTGAGTGGACTGCCCCTACCATTCCCAACCCCGAGTACAATGGTGAATGGAAGCCCAAG

upper sequence: GLYMA10G28890.1 (Glycine max), 3'ss of exon 6
lower sequence: Vv07s0005g01390.t01 (Vitis vinifera), 3'ss of exon 6
---------------gtatttctcaattttttgtttccttgtgctgcataaacatcactttatgctgtagttacttatta--gattaattg--ctgatg-ctgtagCCTGAAGATTGGGATGATGAGGAAGATGGTGAGTGGACACCCCCTACCATTGCCAACCCTGAGTACAAGGGCCCATGGAAGGCAGAG
                |||   ||| | |  |   | ||| |  |    || ||| | || |||  | ||  |||| |||  || ||||     | ||| |  ||||||||||||||||||||||||||||||||||| |||||||| || || || || ||||||||||||||||| ||||||||| |  ||
gtaagtaattagaatttatagttcagtatggtaaattctttta-taaggaaccataatttcatgg-ggagaaacttgttactgaataatcagctttatgaccctagCCTGAAGATTGGGATGATGAGGAAGATGGTGAATGGACACCTCCAACAATAGCTAACCCTGAGTACAAGGGACCATGGAAGCCCAAG

upper sequence: GLYMA10G28890.1 (Glycine max), 3'ss of exon 6
lower sequence: Vv14s0060g01290.t01 (Vitis vinifera), 3'ss of exon 6
--gtatttc-tcaattttttgtttccttgtgctgcataaacatcactttatgctgtagttacttattagattaattgctgatgctgtagCCTGAAGATTGGGATGATGAGGAAGATGGTGAGTGGACACCCCCTACCATTGCCAACCCTGAGTACAAGGGCCCATGGAAGGCAGAG
   |||||  || |  || || |||     | |   |     |   ||| || | | || | | | || | | |||  ||    | ||||||||||||||||||||||||||||||||||| |||||| | || |||||||||||||| ||||||||||| ||||||||| || ||
gtatatttaatccaaattgtgattcaaaaggtt--ttggttttagttttctgatttggtaattgactaaaattatt--tggaattatagCCTGAAGATTGGGATGATGAGGAAGATGGTGAATGGACAGCTCCAACCATTGCCAACCCCGAGTACAAGGGACCATGGAAGCCAAAG

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|207795641|gb|GD765882.1|GD765882
EST:     GGGTATGATGACATCCCAAAAGAGCTCCCAGACCCCGAAGCCAAGAAG                         CCTGAAGATTGGGATGATGAGGAAGATGGTGAGTGGACACCCCCTACCATT
genomic: GGGTATGATGACATCCCAAAAGAGCTCCCAGACCCCGAAGCCAAGAAGgtatttctca ... gatgctgtagCCTGAAGATTGGGATGATGAGGAAGATGGTGAGTGGACACCCCCTACCATT
EST: gi|193623423|gb|FK577825.1|FK577825
EST:     GGGTATGATGACATCCCAAAAGAGCTCCCAGACCCCGAAGCCAAGAAG                         CCTGAAGATTGGGATGATGAGGAAGATGGTGAGTGGACACCCCCTACCA
genomic: GGGTATGATGACATCCCAAAAGAGCTCCCAGACCCCGAAGCCAAGAAGgtatttctca ... gatgctgtagCCTGAAGATTGGGATGATGAGGAAGATGGTGAGTGGACACCCCCTACCA
EST: gi|10842878|gb|BF066239.1|BF066239
EST:     GGGTATGATGACATCCCAAAAGAGCTCCCAGACCCCGAAGCCAAGAAG                         CCTGAAGATTGGGATGATGAGGAAGATGGTGAGTGGACACCCCCTACCATT
genomic: GGGTATGATGACATCCCAAAAGAGCTCCCAGACCCCGAAGCCAAGAAGgtatttctca ... gatgctgtagCCTGAAGATTGGGATGATGAGGAAGATGGTGAGTGGACACCCCCTACCATT
EST: gi|7147106|gb|AW509028.1|AW509028
EST:     GGGTATGATGACATCCCAAAAGAGCTCCCAGACCCCGAAGCCAAGAAG                         CCTGAAGATTGGGATGATGAGGAAGATGGTGAGTGGACACCCCCTACCATT
genomic: GGGTATGATGACATCCCAAAAGAGCTCCCAGACCCCGAAGCCAAGAAGgtatttctca ... gatgctgtagCCTGAAGATTGGGATGATGAGGAAGATGGTGAGTGGACACCCCCTACCATT
EST: gi|14259040|gb|BG881948.1|BG881948
EST:     GGGTATGATGACATCCCAAAAGAGCTCCCAGACCCCGAAGCCAAGAAG                         CCTGAAGATTGGGATGATGAGGAAGATGGTGAGTGGACACCCCCTACCATT
genomic: GGGTATGATGACATCCCAAAAGAGCTCCCAGACCCCGAAGCCAAGAAGgtatttctca ... gatgctgtagCCTGAAGATTGGGATGATGAGGAAGATGGTGAGTGGACACCCCCTACCATT
EST: gi|193611626|gb|FK561293.1|FK561293
EST:     GGGTATGATGACATCCCAAAAGAGCTCCCAGACCCCGAAGCCAAGAAG                         CCTGAAGATTGGGATGATGAGGAAGATGGTGAGTGGACACCCCCTACCATT
genomic: GGGTATGATGACATCCCAAAAGAGCTCCCAGACCCCGAAGCCAAGAAGgtatttctca ... gatgctgtagCCTGAAGATTGGGATGATGAGGAAGATGGTGAGTGGACACCCCCTACCATT
EST: gi|24135631|gb|BU926141.1|BU926141
EST:     GGGTATGATGACATCCCAAAAGAGCTCCCAGACCCCGAAGCCAAGAAG                         CCTGAAGATTGGGATGATGAGGAAGATGGTGAGTGGACACCCCCTACCATT
genomic: GGGTATGATGACATCCCAAAAGAGCTCCCAGACCCCGAAGCCAAGAAGgtatttctca ... gatgctgtagCCTGAAGATTGGGATGATGAGGAAGATGGTGAGTGGACACCCCCTACCATT
EST: gi|208257302|gb|GE056717.1|GE056717
EST:     GGGTATGATGACATCCCAAAAGAGCTCCCAGACCCCGAAGCCAAGAAG                         CCTGAAGATTGGGATGATGAGGAAGATGGTGAGTGGACACCCCCTACCATT
genomic: GGGTATGATGACATCCCAAAAGAGCTCCCAGACCCCGAAGCCAAGAAGgtatttctca ... gatgctgtagCCTGAAGATTGGGATGATGAGGAAGATGGTGAGTGGACACCCCCTACCATT
EST: gi|298191551|gb|HO039030.1|HO039030
EST:     GGGTATGATGACATCCCAAAAGAGCTCCCAGATCCTGAAGCCAAGAAG                         CCTGAAGATTGGGATGATGAGGAAGATGGTGAGTGGACACCCCCTACCATT
genomic: GGGTATGATGACATCCCAAAAGAGCTCCCAGACCCCGAAGCCAAGAAGgtatttctca ... gatgctgtagCCTGAAGATTGGGATGATGAGGAAGATGGTGAGTGGACACCCCCTACCATT
EST: gi|193355757|gb|FK319530.1|FK319530
EST:     GGGTATGATGACATCCCAAAAGAGCTCCCAGACCCCGAAGCCAAGAAG                         CCTGAAGATTGGGATGATGAGGAAGATGGTGAGTGGACACCCCCTACCATT
genomic: GGGTATGATGACATCCCAAAAGAGCTCCCAGACCCCGAAGCCAAGAAGgtatttctca ... gatgctgtagCCTGAAGATTGGGATGATGAGGAAGATGGTGAGTGGACACCCCCTACCATT
EST: gi|120529175|gb|EH257309.1|EH257309
EST:     GGGTATGATGACATCCCAAAAGAGCTCCCAGACCCCGAAGCCAAGAAG                         CCTGAAGATTGGGATGATGAGGAAGATGGTGAGTGGACACCCCCTACCATT
genomic: GGGTATGATGACATCCCAAAAGAGCTCCCAGACCCCGAAGCCAAGAAGgtatttctca ... gatgctgtagCCTGAAGATTGGGATGATGAGGAAGATGGTGAGTGGACACCCCCTACCATT
EST: gi|7233127|gb|AW568477.1|AW568477
EST:     GGGTATGATGACATCCCAAAAGAGCTCCCAGACCCCGAAGCCAAGAAG                         CCTGAAGATTGGGATGATGAGGAAGATGGTGAGTGGACACCCCCTACCATT
genomic: GGGTATGATGACATCCCAAAAGAGCTCCCAGACCCCGAAGCCAAGAAGgtatttctca ... gatgctgtagCCTGAAGATTGGGATGATGAGGAAGATGGTGAGTGGACACCCCCTACCATT
EST: gi|193528649|gb|FK486867.1|FK486867
EST:     GGGTATGATGACATCCCAAAAGAGCTCCCAGACCCCGAAGCCAAGAAG                         CCTGAAGATTGGGATGATGAGGAAGATGGTGAGTGGACACCCCCTACCATT
genomic: GGGTATGATGACATCCCAAAAGAGCTCCCAGACCCCGAAGCCAAGAAGgtatttctca ... gatgctgtagCCTGAAGATTGGGATGATGAGGAAGATGGTGAGTGGACACCCCCTACCATT
EST: gi|19938515|gb|BQ081756.1|BQ081756
EST:     GGGTATGATGACATCCCAAAAGAGCTCCCAGACCCCGAAGCCAAGAAG                         CCTGAAGATTGGGATGATGAGGAAGATGGTGAGTGGACACCCCCTACCATT
genomic: GGGTATGATGACATCCCAAAAGAGCTCCCAGACCCCGAAGCCAAGAAGgtatttctca ... gatgctgtagCCTGAAGATTGGGATGATGAGGAAGATGGTGAGTGGACACCCCCTACCATT
EST: gi|6481781|gb|AW201052.1|AW201052
EST:     GGGTATGATGACATCCCAAAAGAGCTCCCAGACCCCGAAGCCAAGAAG                         CCTGAAGATTGGGATGATGAGGAAGATGGTGAGTGGACACCCCCTACCATT
genomic: GGGTATGATGACATCCCAAAAGAGCTCCCAGACCCCGAAGCCAAGAAGgtatttctca ... gatgctgtagCCTGAAGATTGGGATGATGAGGAAGATGGTGAGTGGACACCCCCTACCATT
EST: gi|193532236|gb|FK491944.1|FK491944
EST:     GGGTATGATGACATCCCAAAAGAGCTCCCAGACCCCGAAGCCAAGAAG                         CCTGAAGATTGGGATGATGAGGAAGATGGTGAGTGGACACCCCCTACCATT
genomic: GGGTATGATGACATCCCAAAAGAGCTCCCAGACCCCGAAGCCAAGAAGgtatttctca ... gatgctgtagCCTGAAGATTGGGATGATGAGGAAGATGGTGAGTGGACACCCCCTACCATT
EST: gi|208304581|gb|GE104830.1|GE104830
EST:     GGGTATGATGACATCCCAAAAGAGCTCCCAGACCCCGAAGCCAAGAAG                         CCTGAAGATTGGGATGATGAGGAAGATGGTGAGTGGACACCCCCTACCATT
genomic: GGGTATGATGACATCCCAAAAGAGCTCCCAGACCCCGAAGCCAAGAAGgtatttctca ... gatgctgtagCCTGAAGATTGGGATGATGAGGAAGATGGTGAGTGGACACCCCCTACCATT
EST: gi|6134570|gb|AW132963.1|AW132963
EST:     GGGTATGATGACATCCCAAAAGAGCTCCCAGACCCCGAAGCCAAGAAG                         CCTGAAGATTGGGATGATGAGGAAGATGGTGAGTGGACACCCCCTACCATT
genomic: GGGTATGATGACATCCCAAAAGAGCTCCCAGACCCCGAAGCCAAGAAGgtatttctca ... gatgctgtagCCTGAAGATTGGGATGATGAGGAAGATGGTGAGTGGACACCCCCTACCATT
EST: gi|18735107|gb|BM528567.1|BM528567
EST:     GGGTATGATGACATCCCAAAAGAGCTCCCAGACCCCGAAGCCAAGAAG                         CCTGAAGATTGGGATGATGAGGAAGATGGTGAGTGGACACCCCCTACCATT
genomic: GGGTATGATGACATCCCAAAAGAGCTCCCAGACCCCGAAGCCAAGAAGgtatttctca ... gatgctgtagCCTGAAGATTGGGATGATGAGGAAGATGGTGAGTGGACACCCCCTACCATT
EST: gi|193406567|gb|FK375526.1|FK375526
EST:     GGGTATGATGACATCCCAAAAGAGCTCCCAGACCCCGAAGCCAAGAAG                         CCTGAAGATTGGGATGATGAGGATGATGGTGAGTGGACACCCCCTACCATT
genomic: GGGTATGATGACATCCCAAAAGAGCTCCCAGACCCCGAAGCCAAGAAGgtatttctca ... gatgctgtagCCTGAAGATTGGGATGATGAGGAAGATGGTGAGTGGACACCCCCTACCATT
EST: gi|120492727|gb|EH220894.1|EH220894
EST:     GGGTATGATGACATCCCAAAAGAGCTCCCAGACCCCGAAGCCAAGAANG                         C-TGAAGATTGGGATGATGAGGAAGATGGTGAGTGGACACCCCCTACCAT
genomic: GGGTATGATGACATCCCAAAAGAGCTCCCAGACCCCGAAGCCAAGAA-Ggtatttctca ... gatgctgtagCCTGAAGATTGGGATGATGAGGAAGATGGTGAGTGGACACCCCCTACCAT
EST: gi|193643994|gb|FK593785.1|FK593785
EST:     GGGTATGATGACATCCCAAAAGAGCTCCCAGACCCCGAAGCCAAGAAG                         CCTGAAGATTGGGATGATGAGGAAGATGGTGAGTGGACGCCCCCTACCATT
genomic: GGGTATGATGACATCCCAAAAGAGCTCCCAGACCCCGAAGCCAAGAAGgtatttctca ... gatgctgtagCCTGAAGATTGGGATGATGAGGAAGATGGTGAGTGGACACCCCCTACCATT
EST: gi|193436294|gb|FK399058.1|FK399058
EST:     GGGTATGATGACATCCCAAAAGAGCTCCCAGACCCCGAAGCCAAGAAG                         CCTGAAGATTGGGATGATGAGGAAGATGGTGAGTGGACACCCCCTACCATT
genomic: GGGTATGATGACATCCCAAAAGAGCTCCCAGACCCCGAAGCCAAGAAGgtatttctca ... gatgctgtagCCTGAAGATTGGGATGATGAGGAAGATGGTGAGTGGACACCCCCTACCATT
EST: gi|208069120|gb|GD869966.1|GD869966
EST:     GGGTATGATGACATCCCAAAAGAGCTCCCAGACCCCGAAGCCAAGAAG                         CCTGAAGATTGGGATGATGAGGAAGATGGTGAGTGGACACCCCCTACCATT
genomic: GGGTATGATGACATCCCAAAAGAGCTCCCAGACCCCGAAGCCAAGAAGgtatttctca ... gatgctgtagCCTGAAGATTGGGATGATGAGGAAGATGGTGAGTGGACACCCCCTACCATT
EST: gi|193655943|gb|FK605299.1|FK605299
EST:     AGGGGTATGATGACATCCCAAAAGAGCTCCCAGACCCCGAAGCCAAGAAG                         CCTGAAGATTGGGATGATGAGGAAGATGGTGAGTGGACACCCCCTACCATT
genomic: AGGGGTATGATGACATCCCAAAAGAGCTCCCAGACCCCGAAGCCAAGAAGgtatttctca ... gatgctgtagCCTGAAGATTGGGATGATGAGGAAGATGGTGAGTGGACACCCCCTACCATT
EST: gi|207709119|gb|GD690563.1|GD690563
EST:     GGGTATGATGACATCCCAAAAGAGCTCCCAGACCCCGAAGCCAAGAAG                         CCTGAAGATTGGGATGATGAGGAAGATGGTGAGTGGACACCCCCTACCATT
genomic: GGGTATGATGACATCCCAAAAGAGCTCCCAGACCCCGAAGCCAAGAAGgtatttctca ... gatgctgtagCCTGAAGATTGGGATGATGAGGAAGATGGTGAGTGGACACCCCCTACCATT
EST: gi|19053178|gb|BM731845.1|BM731845
EST:     GACCCCGAAGCCAAGAAG                         CCTGAAGATTGGGATGATGAGGAAGATGGTGAGTGGACACCCCCTACCATT
genomic: GACCCCGAAGCCAAGAAGgtatttctca ... gatgctgtagCCTGAAGATTGGGATGATGAGGAAGATGGTGAGTGGACACCCCCTACCATT
EST: gi|193384654|gb|FK350212.1|FK350212
EST:     GGGTATGATGACATCCCAAAAGAGCTCCCAGACCCCGAAGCCAAGAAG                         CCTGAAGATTGGGATGATGAGGAAGATGGTGAGTGGACACCCCCTACCATT
genomic: GGGTATGATGACATCCCAAAAGAGCTCCCAGACCCCGAAGCCAAGAAGgtatttctca ... gatgctgtagCCTGAAGATTGGGATGATGAGGAAGATGGTGAGTGGACACCCCCTACCATT
EST: gi|193546097|gb|FK500412.1|FK500412
EST:     GGGTATGATGACATCCCAAAAGAGCTCCCAGACCCCGAAGCCAAGAAG                         CCTGAAGATTGGGATGATGAGGAAGATGGTGAGTGGACACCCCCCTACCAT
genomic: GGGTATGATGACATCCCAAAAGAGCTCCCAGACCCCGAAGCCAAGAAGgtatttctca ... gatgctgtagCCTGAAGATTGGGATGATGAGGAAGATGGTGAGTGGACACCCCC-TACCAT
EST: gi|308097864|gb|HO761035.1|HO761035
EST:     GGGTATGGTGACATCCCAAAAGAGCTCCCAGATCCTGAAGCCAAGAAG                         CCTGAAGATTGGGATGATGAGGAAGATGGTGAGTGGACACCCCCTACCATT
genomic: GGGTATGATGACATCCCAAAAGAGCTCCCAGACCCCGAAGCCAAGAAGgtatttctca ... gatgctgtagCCTGAAGATTGGGATGATGAGGAAGATGGTGAGTGGACACCCCCTACCATT
EST: gi|5753695|gb|AI960982.1|AI960982
EST:     GGGTATGATGACATCCCAAAAGAGCTCCCAGACCCCGAAGCCAAGAAG                         CCTGAAGATTGTGATGATGAGGAAGATGGTGAGTGGACACCCTCTACCATT
genomic: GGGTATGATGACATCCCAAAAGAGCTCCCAGACCCCGAAGCCAAGAAGgtatttctca ... gatgctgtagCCTGAAGATTGGGATGATGAGGAAGATGGTGAGTGGACACCCCCTACCATT
EST: gi|18040310|gb|BM308604.1|BM308604
EST:     GGGTATGATGACATCCCAAAAGAGCTCCCAGACCCCGAAGCCAAGAAG                         CCTGAAGATTGGGATGATGAGGAAGATGGTGAGTGGACACCCCCTACCATT
genomic: GGGTATGATGACATCCCAAAAGAGCTCCCAGACCCCGAAGCCAAGAAGgtatttctca ... gatgctgtagCCTGAAGATTGGGATGATGAGGAAGATGGTGAGTGGACACCCCCTACCATT
EST: gi|208074731|gb|GD870734.1|GD870734
EST:     GGGTTATGATGACATCCCAAAAGAGCTCCCAGACCCCGAAGCCAAGAAG                         CCTGAAGGTTGGGATGATGAGGAAGATGGTGAGTGGACACCCCCTACCATT
genomic: GGG-TATGATGACATCCCAAAAGAGCTCCCAGACCCCGAAGCCAAGAAGgtatttctca ... gatgctgtagCCTGAAGATTGGGATGATGAGGAAGATGGTGAGTGGACACCCCCTACCATT
EST: gi|193343559|gb|FK306923.1|FK306923
EST:     CAGACCCCGAAGCCAAGAAG                         CCTGAAGATTGGGATGATGAGGAAGATGGTGAGTGGACACCCCCTACCATT
genomic: CAGACCCCGAAGCCAAGAAGgtatttctca ... gatgctgtagCCTGAAGATTGGGATGATGAGGAAGATGGTGAGTGGACACCCCCTACCATT
EST: gi|193700424|gb|FK635053.1|FK635053
EST:     GGGTATGATGACATCCCAAAAGAGCTCCCAGACCCCGAAGCCAAGAAG                         CCTGAAGATTGGGATGATGAGGAAGATGGTGAGTGGACACCCCCTACCATT
genomic: GGGTATGATGACATCCCAAAAGAGCTCCCAGACCCCGAAGCCAAGAAGgtatttctca ... gatgctgtagCCTGAAGATTGGGATGATGAGGAAGATGGTGAGTGGACACCCCCTACCATT
EST: gi|8404295|gb|BE059929.1|BE059929
EST:     GGGTATGATGACATCCCAAAAGAGCTCCCAGACCCCGAAGCCAAGAAG                         CCTGAAGATTGGGATGATGAGGAAGATGGTGAGTGGACACCCTCTACCATT
genomic: GGGTATGATGACATCCCAAAAGAGCTCCCAGACCCCGAAGCCAAGAAGgtatttctca ... gatgctgtagCCTGAAGATTGGGATGATGAGGAAGATGGTGAGTGGACACCCCCTACCATT
EST: gi|193732517|gb|FK668059.1|FK668059
EST:     GGGTATGATGACATCCCAAAAGAGCTCCCAGACCCCGAAGCCAAGAAG                         CCTGAAGATTGGGATGATGAGG
genomic: GGGTATGATGACATCCCAAAAGAGCTCCCAGACCCCGAAGCCAAGAAGgtatttctca ... gatgctgtagCCTGAAGATTGGGATGATGAGG
EST: gi|193594586|gb|FK546263.1|FK546263
EST:     GGGTATGATGACATCCCAAAAGAGCTCCCAGACCCCGAAGCCAAGAAG                         CCTGAAGATTGGGA
genomic: GGGTATGATGACATCCCAAAAGAGCTCCCAGACCCCGAAGCCAAGAAGgtatttctca ... gatgctgtagCCTGAAGATTGGGA
EST: gi|23728381|gb|BU762243.1|BU762243
EST:     GGGTATGATGACATCCCAAAAGAGCTCCCAGACCCCGAAGCCAAGAAG                         CCTGAAGATTGGGATGATGAGGAAGATGGTGAGTGGACACCCCCTACCATT
genomic: GGGTATGATGACATCCCAAAAGAGCTCCCAGACCCCGAAGCCAAGAAGgtatttctca ... gatgctgtagCCTGAAGATTGGGATGATGAGGAAGATGGTGAGTGGACACCCCCTACCATT
EST: gi|193313929|gb|FK282432.1|FK282432
EST:     GGGTATGATGACATCCCAAAAGAGCTCCCAGACCCCGAAGCCAAGAAG                         CCTGAAGATTGGGATGATGAGGAAGATGGTGAGTGGACACCCCCTACCATT
genomic: GGGTATGATGACATCCCAAAAGAGCTCCCAGACCCCGAAGCCAAGAAGgtatttctca ... gatgctgtagCCTGAAGATTGGGATGATGAGGAAGATGGTGAGTGGACACCCCCTACCATT
EST: gi|19453199|gb|BM954609.1|BM954609
EST:     GGGTATGATGACATCCCAAAAGAGCTCCCAGATCCTGAAGCCAAGAAG                         CCTGAAGATTGGGATGATGAGGAAGATGGTGAGTGGACACCCCCTACCATT
genomic: GGGTATGATGACATCCCAAAAGAGCTCCCAGACCCCGAAGCCAAGAAGgtatttctca ... gatgctgtagCCTGAAGATTGGGATGATGAGGAAGATGGTGAGTGGACACCCCCTACCATT
EST: gi|120493122|gb|EH221289.1|EH221289
EST:     GGGTATGATGACATCCCAAAAGAGCTCCCAGACCCCGAAGCCAAGAAG                         CCTGAAGATTGGGATGATGAGGAAGATGGTGAGTGGACACCCCCTACCATT
genomic: GGGTATGATGACATCCCAAAAGAGCTCCCAGACCCCGAAGCCAAGAAGgtatttctca ... gatgctgtagCCTGAAGATTGGGATGATGAGGAAGATGGTGAGTGGACACCCCCTACCATT
EST: gi|208044942|gb|GD840162.1|GD840162
EST:     GGGTATGATGACATCCCAAAAGAGCTCCCAGACCCCGAAGCCAAGAAG                         CCTGAAGATTGGGATGATGAGGAAGATGGTGAGTGGACACCCCCTACCATT
genomic: GGGTATGATGACATCCCAAAAGAGCTCCCAGACCCCGAAGCCAAGAAGgtatttctca ... gatgctgtagCCTGAAGATTGGGATGATGAGGAAGATGGTGAGTGGACACCCCCTACCATT
EST: gi|193632487|gb|FK584241.1|FK584241
EST:     GGGTATGATGACATCCCAAAAGAGCTCCCAGACCCCGAAGCCAAGAAG                         CCTGAAGATTGGGATGATGAGGAAGATGGTGAGTGGACACCCCCTACCATT
genomic: GGGTATGATGACATCCCAAAAGAGCTCCCAGACCCCGAAGCCAAGAAGgtatttctca ... gatgctgtagCCTGAAGATTGGGATGATGAGGAAGATGGTGAGTGGACACCCCCTACCATT
EST: gi|207741492|gb|GD713862.1|GD713862
EST:     GGGTATGATGACATCCCAAAAGAGCTCCCAGACCCCGAAGCCAAGAAG                         CCTGAAGATTGGGATGATGAGGAAGATGGTGAGTGGGCACCCCCTACCATT
genomic: GGGTATGATGACATCCCAAAAGAGCTCCCAGACCCCGAAGCCAAGAAGgtatttctca ... gatgctgtagCCTGAAGATTGGGATGATGAGGAAGATGGTGAGTGGACACCCCCTACCATT
EST: gi|26058830|gb|CA801744.1|CA801744
EST:     GGGTATGATGACATCCCAAAAGAGCTCCCAGACCCCGAAGCCAAGAAG                         CCTGAAGATTGGGATGATGAGGAAGATGGTGAGTGGACACCCCCTACCATT
genomic: GGGTATGATGACATCCCAAAAGAGCTCCCAGACCCCGAAGCCAAGAAGgtatttctca ... gatgctgtagCCTGAAGATTGGGATGATGAGGAAGATGGTGAGTGGACACCCCCTACCATT
EST: gi|7234631|gb|AW569967.1|AW569967
EST:     CCCAAAAGAGCTCCCAGACCCCGAAGCCAAGAAG                         CCTGAAGATTGGGATGATGAGGAAGATGGTGAGTGGACACCCCCTACCATT
genomic: CCCAAAAGAGCTCCCAGACCCCGAAGCCAAGAAGgtatttctca ... gatgctgtagCCTGAAGATTGGGATGATGAGGAAGATGGTGAGTGGACACCCCCTACCATT
EST: gi|151411454|gb|EV281265.1|EV281265
EST:     GGGTATGATGACATCCCAAAAGAGCTCCCAGACCCCGAAGCCAAGAAG                         CCTGAAGATTGGGATGATGAGGAAGATGGTGAGTGGACACCCCCTACCATT
genomic: GGGTATGATGACATCCCAAAAGAGCTCCCAGACCCCGAAGCCAAGAAGgtatttctca ... gatgctgtagCCTGAAGATTGGGATGATGAGGAAGATGGTGAGTGGACACCCCCTACCATT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

cataaacatcactttatgctgtagttacttattagattaattgctgatgctgtagCCTGAAGATTGGGATGATGAGGAAGATGGTGAGTGGACACCCCCTACCATTGCCAACCCTGAGTACAAGGGCCCATGGAAGGCAGAG
                                         tgctgat  putative branch site (score: 3)
                     tagttacttattagat  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gtatttctcaattttttgtttccttgtgctgcataaacatcactttatgctgtagttacttattagattaattgctgatgctgtagCCTGAAGATTGGGATGATGAGGAAGATGGTGAGTGGACACCCCCTACCATTGCCAACCCTGAGTACAAGGGCCCATGGAAGGCAGAG

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  CATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  TGGAAG