1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' |
...tacatttaaaactttcttaaggatatttttccccagtggctattagttctttatttttttttgtttcaattgtttatttgaattatctttttacatttagCTGCTGAGGATGAGGATCTGGCTCCTGGTGCAAAGAAAATTCATCCTGGAATATCTTCTAGCATAATTTCCGAGCTAACTGATTGCAATGCTTCTCTTTC
species | Glycine max |
transcript | GLYMA10G26870.1 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: ACCAAATGCCATAACAGCAAATGACCCTGTCCTGAGCAACGGGAAAAGAG CTGCTGAGGATGAGGATCTGGCTCCTGGTGCAAAGAAAATTCATCCTGGAAEST: gi|19348760|gb|BM893292.1|BM893292
genomic: ACCAAATGCCATAACAGCAAATGACCCTGTCCTGAGCAACGGGAAAAGAGgttttcacgt ... ttacatttagCTGCTGAGGATGAGGATCTGGCTCCTGGTGCAAAGAAAATTCATCCTGGAA
EST: ACCAAATGCCATAACAGCAAATGACCCTGTCCTGAGCAACGGGAAAAGAA CTGCTGAAGATGAEST: gi|254321377|gb|GR824694.1|GR824694
genomic: ACCAAATGCCATAACAGCAAATGACCCTGTCCTGAGCAACGGGAAAAGAGgttttcacgt ... ttacatttagCTGCTGAGGATGA
EST: ACCAAATGCCATAACAGCAAATGACCCTGTCCTGAGCAACGGGAAAAGAG CTGCTGAGGATGAGGATCTGGCTCCTGGTGCAAAGAAAATTCATCCTGGAAEST: gi|151396835|gb|EV266708.1|EV266708
genomic: ACCAAATGCCATAACAGCAAATGACCCTGTCCTGAGCAACGGGAAAAGAGgttttcacgt ... ttacatttagCTGCTGAGGATGAGGATCTGGCTCCTGGTGCAAAGAAAATTCATCCTGGAA
EST: ACCAAATGCCATAACAGCAAATGACCCTGTCCTGAGCAACGGGAAAAGAG CTGCTGAGGATGAGGATCTGGCTCCTGGTGCAAAGAAAATTCATCCTGGAA
genomic: ACCAAATGCCATAACAGCAAATGACCCTGTCCTGAGCAACGGGAAAAGAGgttttcacgt ... ttacatttagCTGCTGAGGATGAGGATCTGGCTCCTGGTGCAAAGAAAATTCATCCTGGAA
gttctttatttttttttgtttcaattgtttatttgaattatctttttacatttagCTGCTGAGGATGAGGATCTGGCTCCTGGTGCAAAGAAAATTCATCCTGGAATATCTTCTAGCATAATTTCCGAGCTAACTGATTGCAATGCTTCTCTTTC
ttatcttttt CT-rich tract
ttatttttttttgttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tacatttaaaactttcttaaggatatttttccccagtggctattagttctttatttttttttgtttcaattgtttatttgaattatctttttacatttagCTGCTGAGGATGAGGATCTGGCTCCTGGTGCAAAGAAAATTCATCCTGGAATATCTTCTAGCATAATTTCCGAGCTAACTGATTGCAATGCTTCTCTTTC
- - - - - - - - - - - - - -tttcccc
- - - - - - - - - - - - - - - - - -gtggcta