Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaacataaaagaagagaatgccttacaaattcaaaagcatcacatcatgttactattgttgactcgtttattttttgcactcatttttcattcacaatttcacatgcagACTCTAAGTGAAAAACGGGCAAAATGCGAGTGTACAAGCATGCAAAAGGCAGATACAAATCAAATTGCTTGACCACCTTTCTTTATGAGCGATACATAGC

Basic information

species Glycine max
transcript GLYMA10G12150.1
intron # 6
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|57574310|gb|CX547285.1|CX547285
EST:     TGTTGGACTTGGCTGTTGAATACATTAAAGATCTTCAGAAACAATTCAAG                         ACTCTAAGTGAAAAACGGGCAAAATGCGAGTGTACAAGCATGCAAAAGGCA
genomic: TGTTGGACTTGGCTGTTGAATACATTAAAGATCTTCAGAAACAATTCAAGgtaacataaa ... tcacatgcagACTCTAAGTGAAAAACGGGCAAAATGCGAGTGTACAAGCATGCAAAAGGCA
EST: gi|22932208|gb|BU549347.1|BU549347
EST:     TGTTGGACTTGGCTGTTGAATACATTAAAGATCTTCAGAAACAATTCAAG                         ACTCTAAGTGAAAAACGGGCAAAATGCGAGTGTACAAGCATGCAAAAGGCA
genomic: TGTTGGACTTGGCTGTTGAATACATTAAAGATCTTCAGAAACAATTCAAGgtaacataaa ... tcacatgcagACTCTAAGTGAAAAACGGGCAAAATGCGAGTGTACAAGCATGCAAAAGGCA
EST: gi|58015020|gb|CX701762.1|CX701762
EST:     TGTTGGACTTGGCTGTTGAATACATTAAAGATCTTCAGAAACAATTCAAG                         ACTCTAAGTGAAAAACGGGCAAAATGCGAGTGTACAAGCATGCAAAAGGCA
genomic: TGTTGGACTTGGCTGTTGAATACATTAAAGATCTTCAGAAACAATTCAAGgtaacataaa ... tcacatgcagACTCTAAGTGAAAAACGGGCAAAATGCGAGTGTACAAGCATGCAAAAGGCA
EST: gi|58015327|gb|CX702069.1|CX702069
EST:     TGTTGGACTTGGCTGTTGAATACATTAAAGATCTTCAGAAACAATTCAAG                         ACTCTAAGTGAAAAACGGGCAAAATGCGAGTGTACAAGCATGCAAAAGGCA
genomic: TGTTGGACTTGGCTGTTGAATACATTAAAGATCTTCAGAAACAATTCAAGgtaacataaa ... tcacatgcagACTCTAAGTGAAAAACGGGCAAAATGCGAGTGTACAAGCATGCAAAAGGCA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

attgttgactcgtttattttttgcactcatttttcattcacaatttcacatgcagACTCTAAGTGAAAAACGGGCAAAATGCGAGTGTACAAGCATGCAAAAGGCAGATACAAATCAAATTGCTTGACCACCTTTCTTTATGAGCGATACATAGC
  tgttgac  putative branch site (score: 3)
            tttatttttt  TA-rich tract