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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...atcgtgtcctgttcctgacattttcagattgatatcaacttaatgcaagcttttgtttgcaaggccagtgacatggtagttcatttcatccattgtatagGTTTCTTCAAGGACCAGAAACAGATCAGGCAACTGTTTCCAGGATAAGGGATGCTATCAGAGAACAAAGGGAAATCACTGTACAGTTGATAAACTATACT

Basic information

species Glycine max
transcript GLYMA08G33560.2
intron # 6
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA08G33560.1 (Glycine max), 3'ss of exon 6
lower sequence: Vv03s0038g04210.t01 (Vitis vinifera), 3'ss of exon 6
atcgtgtcctgttcctgacattttcagattgatatcaacttaatgcaagct-tttgtttgcaaggccagtgacatggtagttcatttcatccattgtatagGTTTCTTCAAGGACCAGAAACAGATCAGGCAACTGTTTCCAGGATAAGGGATGCTATCAGAGAACAAAGGGAAATCACTGTACAGTTGATAAACTATACT
          ||   |    ||| ||  || || |     |||| |||  |   | |   |||   || |   ||  |  ||   |||||   | | | || |||||||| ||||| ||||| ||||| | ||| || || | |||||| |||||||||||| ||||||||||||||||||| |||||||| ||||| || 
----------gtgtgtatattttacatgttaatttag---taattcaatttgcctatcatcaacatcaattcaattctcattagcttcatttgtgggacagATTTCTTCAGGGACCTGAAACTGATCAAGGAACCGTCTCAAAGATAAGAGATGCTATCAGACAACAAAGGGAAATCACTGTTCAGTTGATCAACTACACA
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|31306491|gb|CD391694.1|CD391694
EST:     CTTGAACTTACGGAATATACACGAGAAGAAATTTTGGGACGAAATTGTCG                         GTTTCTTCAAGGACCAGAAACAGATCAGGCAACTGTTTCCAGGATAAGGGA
genomic: CTTGAACTTACGGAATATACACGAGAAGAAATTTTGGGACGAAATTGTCGgtataaattt ... cattgtatagGTTTCTTCAAGGACCAGAAACAGATCAGGCAACTGTTTCCAGGATAAGGGA






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

caagcttttgtttgcaaggccagtgacatggtagttcatttcatccattgtatagGTTTCTTCAAGGACCAGAAACAGATCAGGCAACTGTTTCCAGGATAAGGGATGCTATCAGAGAACAAAGGGAAATCACTGTACAGTTGATAAACTATACT
                                      tttcatcc  CT-rich tract
     ttttgttt  TA-rich tract