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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtactatagtaattatatattatatatatttacacgttactttttctccaatatgacaactaattgcataatgctttgattcttcaattgtcaatcacagTGCCTGTAGCTGTTTTTGTGCTTGGAGTAGCTGCAGGACTTGAGGTAATGAGCTACAAAATGCTATTAATCATGTCAGTGATTAGTTTTGGTGTTCTAGT

Basic information

species Glycine max
transcript GLYMA08G18730.1
intron # 6
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA08G18730.1 (Glycine max), 3'ss of exon 6
lower sequence: AT3G14410.1 (Arabidopsis thaliana), 3'ss of exon 4
gtactatagtaattatatattatatatatttacacgttactttttctccaatatgacaactaattgcataatgctttg-attcttcaattgtcaatcacagTGCCTGTAGCTGTTTTTGTGCTTGGAGTAGCTGCAGGACTTGAGGTAATGAGCTACAAAATGCTATTAATCATGTCAGTGATTAGTTTTGGTGTTCTAGT
|||  | | |  | ||    |   | |  | | | ||  ||| |  |    | | | | || | |  | ||||    | |||||||||   | | |  |||||||||| ||||| ||| | |||||||||||||| ||||||||  | ||||||| ||  ||||| || || |||||  | || |||||||||||| ||||
gtaagaaactgttcatgctcttggt-tcctcataagt--cttatgtttacttcttatatctgacta-acaatgtacagtattcttcaaccat-acttgcagTGCCTGTTGCTGTGTTTATTCTTGGAGTAGCTGCTGGACTTGAAATGATGAGCTGCAGGATGCTTTTGATAATGTCTATCATAAGTTTTGGTGTTTTAGT

upper sequence: GLYMA08G18730.1 (Glycine max), 3'ss of exon 6
lower sequence: Vv15s0046g00460.t01 (Vitis vinifera), 3'ss of exon 4
---gtactatagtaattatatattatatatatttacacgttactttt--tctccaatatgacaactaattgcataatgctttgattcttcaattgtcaatcacagTGCCTGTAGCTGTTTTTGTGCTTGGAGTAGCTGCAGGACTTGAGGTAATGAGCTACAAAATGCTATTAATCATGTCAGTGATTAGTTTTGGTGTTCTAGT
    |  | |  |      |  |||  |   | ||  |  |   |    | | |  ||| |  | | ||  ||  |    ||      | | || ||  |||||||||| |||||||| ||  | || |||||||| || || |||||  | ||||||| || |||||| ||||| ||||||||||| |||||||| ||||||||
tatctgttttcttggcaggagcttaagttggtataagccctgggtcaagtgttctttataatcattcatcacaagagagctt-----ctgatttttctttcacagTGCCAGTAGCTGTGTTCATTCTCGGAGTAGCAGCCGGCCTTGAAATTATGAGCTGCAGAATGCTCTTAATAATGTCAGTGATCAGTTTTGGAGTTCTAGT


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ctccaatatgacaactaattgcataatgctttgattcttcaattgtcaatcacagTGCCTGTAGCTGTTTTTGTGCTTGGAGTAGCTGCAGGACTTGAGGTAATGAGCTACAAAATGCTATTAATCATGTCAGTGATTAGTTTTGGTGTTCTAGT
            aactaatt  TA-rich tract